1 708 142 BYSTANDER EFFECTS IN RADIATION-INDUCED GENOMIC INSTABILITY. EXPOSURE OF GM10115 HAMSTER-HUMAN HYBRID CELLS TO X-RAYS CAN RESULT IN THE INDUCTION OF CHROMOSOMAL INSTABILITY IN THE PROGENY OF SURVIVING CELLS. THIS INSTABILITY MANIFESTS AS THE DYNAMIC PRODUCTION OF NOVEL SUB-POPULATIONS OF CELLS WITH UNIQUE CYTOGENETIC REARRANGEMENTS INVOLVING THE "MARKER" HUMAN CHROMOSOME. WE HAVE USED THE COMET ASSAY TO INVESTIGATE WHETHER THERE WAS AN ELEVATED LEVEL OF ENDOGENOUS DNA BREAKS IN CHROMOSOMALLY UNSTABLE CLONES THAT COULD PROVIDE A SOURCE FOR THE CHROMOSOMAL REARRANGEMENTS AND THUS ACCOUNT FOR THE PERSISTENT INSTABILITY OBSERVED. OUR RESULTS INDICATE NO SIGNIFICANT DIFFERENCE IN COMET TAIL MEASUREMENT BETWEEN NON-IRRADIATED AND RADIATION-INDUCED CHROMOSOMALLY UNSTABLE CLONES. USING TWO-COLOR FLUORESCENCE IN SITU HYBRIDIZATION WE ALSO INVESTIGATED WHETHER RECOMBINATIONAL EVENTS INVOLVING THE INTERSTITIAL TELOMERE REPEAT-LIKE SEQUENCES IN GM10115 CELLS WERE INVOLVED AT FREQUENCIES HIGHER THAN RANDOM PROCESSES WOULD OTHERWISE PREDICT. NINE OF 11 CLONES DEMONSTRATED A SIGNIFICANTLY HIGHER THAN EXPECTED INVOLVEMENT OF THESE INTERSTITIAL TELOMERE REPEAT-LIKE SEQUENCES AT THE RECOMBINATION JUNCTION BETWEEN THE HUMAN AND HAMSTER CHROMOSOMES. SINCE ELEVATED LEVELS OF ENDOGENOUS BREAKS WERE NOT DETECTED IN UNSTABLE CLONES WE PROPOSE THAT EPIGENETIC OR BYSTANDER EFFECTS (BSES) LEAD TO THE ACTIVATION OF RECOMBINATIONAL PATHWAYS THAT PERPETUATE THE UNSTABLE PHENOTYPE. SPECIFICALLY, WE EXPAND UPON THE HYPOTHESIS THAT RADIATION INDUCES CONDITIONS AND/OR FACTORS THAT STIMULATE THE PRODUCTION OF REACTIVE OXYGEN SPECIES (ROS). THESE REACTIVE INTERMEDIATES THEN CONTRIBUTE TO A CHRONIC PRO-OXIDANT ENVIRONMENT THAT CYCLES OVER MULTIPLE GENERATIONS, PROMOTING CHROMOSOMAL RECOMBINATION AND OTHER PHENOTYPES ASSOCIATED WITH GENOMIC INSTABILITY. 2002 2 5344 31 RADIOBIOLOGICAL FEATURES IN OFFSPRING OF NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER AFTER CHERNOBYL ACCIDENT. IN THEIR NATURAL HABITATS, POPULATIONS OF ORGANISMS ARE FACED WITH DIFFERENT LEVELS OF CHRONIC LOW-INTENSITY RADIATION, CAUSING A WIDE RANGE OF RADIOBIOLOGICAL EFFECTS (FROM RADIOSENSITIVITY TO RADIOADAPTIVE RESPONSE AND HORMESIS). IN THIS STUDY, SPECIMENS OF DROSOPHILA MELANOGASTER WERE SELECTED FROM TERRITORIES OF THE CHERNOBYL NUCLEAR POWER PLANT WITH DIFFERENT LEVELS OF RADIOACTIVE CONTAMINATION. THE ISOGENIC STOCKS DERIVED FROM THESE SPECIMENS REPRESENT THE GENETIC SYSTEMS OF CURRENT POPULATIONS AND MAKE IT POSSIBLE TO STUDY RADIORESISTANCE AND ITS MECHANISMS IN FUTURE GENERATIONS UNDER CONTROLLED LABORATORY CONDITIONS. PREVIOUS STUDIES HAVE SHOWN THAT TRANSGENERATIONAL RADIATION EFFECTS AT THE LEVEL OF LETHAL MUTATIONS AND SURVIVAL RATE ARE UNSTABLE AND DEPEND NOT ONLY ON THE LEVEL OF CHRONIC LOW-INTENSITY IRRADIATION, BUT ALSO ON OTHER FACTORS. A SINGLE ACUTE IRRADIATION EXPOSURE OF OFFSPRING WHOSE PARENTS INHABITED A SITE WITH A HIGHER LEVEL OF CHRONIC IRRADIATION MADE IT POSSIBLE TO REVEAL PRONOUNCED RADIORESISTANT FEATURES IN THE OFFSPRING. AND THE OFFSPRING WHOSE PARENTS WERE EXPOSED TO RADIATION LEVELS CLOSE TO THE NATURAL RADIATION BACKGROUND, ON THE CONTRARY, ACQUIRED RADIOSENSITIVE FEATURES. THEIR RESPONSE TO ACUTE EXPOSURE INCLUDES A HIGH-FREQUENCY OF LETHAL MUTATIONS AND A SHORT LIFESPAN. THE DIFFERENTIAL RESPONSE TO DIFFERENT LEVELS OF CHRONIC PARENTAL EXPOSURE IS CAUSED BY DIFFERENCES IN THE ACTIVITIES OF CERTAIN TRANSPOSONS THAT DESTABILIZE THE GENOME. OUR DATA CONTRIBUTE TO THE UNDERSTANDING OF GENETIC AND EPIGENETIC MECHANISMS (VIA TRANSPOSON ACTIVITY) OF THE EFFECT OF PARENTAL RADIATION EXPOSURE ON THE HEALTH AND ADAPTIVE POTENTIAL OF POPULATIONS AFFECTED BY THE TECHNOGENICALLY INCREASED RADIATION BACKGROUND. 2022 3 40 33 A COMPARISON OF HERPES SIMPLEX VIRUS TYPE 1 AND VARICELLA-ZOSTER VIRUS LATENCY AND REACTIVATION. HERPES SIMPLEX VIRUS TYPE 1 (HSV-1; HUMAN HERPESVIRUS 1) AND VARICELLA-ZOSTER VIRUS (VZV; HUMAN HERPESVIRUS 3) ARE HUMAN NEUROTROPIC ALPHAHERPESVIRUSES THAT CAUSE LIFELONG INFECTIONS IN GANGLIA. FOLLOWING PRIMARY INFECTION AND ESTABLISHMENT OF LATENCY, HSV-1 REACTIVATION TYPICALLY RESULTS IN HERPES LABIALIS (COLD SORES), BUT CAN OCCUR FREQUENTLY ELSEWHERE ON THE BODY AT THE SITE OF PRIMARY INFECTION (E.G. WHITLOW), PARTICULARLY AT THE GENITALS. RARELY, HSV-1 REACTIVATION CAN CAUSE ENCEPHALITIS; HOWEVER, A THIRD OF THE CASES OF HSV-1 ENCEPHALITIS ARE ASSOCIATED WITH HSV-1 PRIMARY INFECTION. PRIMARY VZV INFECTION CAUSES VARICELLA (CHICKENPOX) FOLLOWING WHICH LATENT VIRUS MAY REACTIVATE DECADES LATER TO PRODUCE HERPES ZOSTER (SHINGLES), AS WELL AS AN INCREASINGLY RECOGNIZED NUMBER OF SUBACUTE, ACUTE AND CHRONIC NEUROLOGICAL CONDITIONS. FOLLOWING PRIMARY INFECTION, BOTH VIRUSES ESTABLISH A LATENT INFECTION IN NEURONAL CELLS IN HUMAN PERIPHERAL GANGLIA. HOWEVER, THE DETAILED MECHANISMS OF VIRAL LATENCY AND REACTIVATION HAVE YET TO BE UNRAVELLED. IN BOTH CASES LATENT VIRAL DNA EXISTS IN AN 'END-LESS' STATE WHERE THE ENDS OF THE VIRUS GENOME ARE JOINED TO FORM STRUCTURES CONSISTENT WITH UNIT LENGTH EPISOMES AND CONCATEMERS, FROM WHICH VIRAL GENE TRANSCRIPTION IS RESTRICTED. IN LATENTLY INFECTED GANGLIA, THE MOST ABUNDANTLY DETECTED HSV-1 RNAS ARE THE SPLICED PRODUCTS ORIGINATING FROM THE PRIMARY LATENCY ASSOCIATED TRANSCRIPT (LAT). THIS PRIMARY LAT IS AN 8.3 KB UNSTABLE TRANSCRIPT FROM WHICH TWO STABLE (1.5 AND 2.0 KB) INTRONS ARE SPLICED. TRANSCRIPTS MAPPING TO 12 VZV GENES HAVE BEEN DETECTED IN HUMAN GANGLIA REMOVED AT AUTOPSY; HOWEVER, IT IS DIFFICULT TO ASCRIBE THESE AS TRANSCRIPTS PRESENT DURING LATENT INFECTION AS EARLY-STAGE VIRUS REACTIVATION MAY HAVE TRANSPIRED IN THE POST-MORTEM TIME PERIOD IN THE GANGLIA. NONETHELESS, LOW-LEVEL TRANSCRIPTION OF VZV ORF63 HAS BEEN REPEATEDLY DETECTED IN MULTIPLE GANGLIA REMOVED AS CLOSE TO DEATH AS POSSIBLE. THERE IS INCREASING EVIDENCE THAT HSV-1 AND VZV LATENCY IS EPIGENETICALLY REGULATED. IN VITRO MODELS THAT PERMIT PATHWAY ANALYSIS AND IDENTIFICATION OF BOTH EPIGENETIC MODULATIONS AND GLOBAL TRANSCRIPTIONAL MECHANISMS OF HSV-1 AND VZV LATENCY HOLD MUCH PROMISE FOR OUR FUTURE UNDERSTANDING IN THIS COMPLEX AREA. THIS REVIEW SUMMARIZES THE MOLECULAR BIOLOGY OF HSV-1 AND VZV LATENCY AND REACTIVATION, AND ALSO PRESENTS FUTURE DIRECTIONS FOR STUDY. 2015 4 5557 37 ROLE OF GENOMIC INSTABILITY IN ARSENIC-INDUCED CARCINOGENICITY. A REVIEW. EXPOSURE TO CHRONIC ARSENIC TOXICITY IS ASSOCIATED WITH CANCER. ALTHOUGH UNSTABLE GENOME IS A CHARACTERISTIC FEATURE OF CANCER CELLS, THE MECHANISMS LEADING TO GENOMIC INSTABILITY IN ARSENIC-INDUCED CARCINOGENESIS ARE POORLY UNDERSTOOD. WHILE THERE ARE EXCELLENT REVIEWS RELATING TO GENOMIC INSTABILITY IN GENERAL, THERE IS NO COMPREHENSIVE REVIEW PRESENTING THE MECHANISMS INVOLVED IN ARSENIC-INDUCED GENOMIC INSTABILITY. THIS REVIEW WAS UNDERTAKEN TO PRESENT THE CURRENT STATE OF RESEARCH IN THIS AREA AND TO HIGHLIGHT THE MAJOR MECHANISMS THAT MAY INVOLVED IN ARSENIC-INDUCED GENOMIC INSTABILITY LEADING TO CANCER. GENOMIC INSTABILITY IS BROADLY CLASSIFIED INTO CHROMOSOMAL INSTABILITY (CIN), PRIMARILY ASSOCIATED WITH MITOTIC ERRORS; AND MICROSATELLITE INSTABILITY (MIN), ASSOCIATED WITH DNA LEVEL INSTABILITY. ARSENIC-INDUCED GENOMIC INSTABILITY IS ESSENTIALLY MULTI-FACTORIAL IN NATURE AND INVOLVES MOLECULAR CROSS-TALK ACROSS SEVERAL CELLULAR PATHWAYS, AND IS MODULATED BY A NUMBER OF ENDOGENOUS AND EXOGENOUS FACTORS. ARSENIC AND ITS METABOLITES GENERATE OXIDATIVE STRESS, WHICH IN TURN INDUCES GENOMIC INSTABILITY THROUGH DNA DAMAGE, IRREVERSIBLE DNA REPAIR, TELOMERE DYSFUNCTION, MITOTIC ARREST AND APOPTOSIS. IN ADDITION TO GENETIC ALTERATION; EPIGENETIC REGULATION THROUGH PROMOTER METHYLATION AND MIRNA EXPRESSION ALTERS GENE EXPRESSION PROFILING LEADING TO GENOME MORE VULNERABLE AND UNSTABLE TOWARDS CANCER RISK. MOREOVER, MUTATIONS OR SILENCING OF PRO-APOPTOTIC GENES CAN LEAD TO GENOMIC INSTABILITY BY ALLOWING SURVIVAL OF DAMAGED CELLS THAT WOULD OTHERWISE DIE. ALTHOUGH A LARGE BODY OF INFORMATION IS NOW GENERATED REGARDING ARSENIC-INDUCED CARCINOGENESIS; FURTHER STUDIES EXPLORING GENOME-WIDE ASSOCIATION, ROLE OF ENVIRONMENT AND DIET ARE NEEDED FOR A BETTER UNDERSTANDING OF THE ARSENIC-INDUCED GENOMIC INSTABILITY. 2013 5 4678 31 NEW MOLECULAR MARKERS IN RESISTANT B-CLL. B-CHRONIC LYMPHOCYTIC LEUKEMIA (B-CLL) IS CHARACTERIZED BY A HIGHLY VARIABLE CLINICAL COURSE WHICH HAS LONG REMAINED A STUMBLING BLOCK FOR CLINICIANS. THIS VARIABILITY APPEARS TO ARISE FROM COMPLEX MOLECULAR ALTERATIONS IDENTIFIED IN MALIGNANT CELLS FROM PATIENT SUBSETS. RECENT STUDIES HAVE FOCUSED IN PARTICULAR ON IDENTIFYING NEW MOLECULAR MARKERS TO HELP PREDICT THE MOST EFFECTIVE AND ADAPTED TREATMENTS. IN ADDITION TO THE MUTATION STATUS OF IMMUNOGLOBULIN VARIABLE HEAVY-CHAIN REGION (IGVH) GENES, WHICH IS A WELL-ESTABLISHED PREDICTIVE FACTOR IN B-CLL, THESE NEW MARKERS INCLUDE DEFECTS OF CELL FACTORS INVOLVED IN THE MAINTENANCE OF GENOME STABILITY, SUCH AS TELOMERE FUNCTION, DNA REPAIR, ATM AND P53. OTHER PREDICTIVE FACTORS, SUCH AS TYROSINE KINASE ZAP-70 AND SOLUBLE FACTORS FOUND IN PATIENT SERA, MAY BE ASSOCIATED WITH B-CELL RECEPTOR SIGNAL TRANSDUCTION. INTERESTINGLY, AN ALTERATION OF THESE FACTORS FITS CLOSELY, THOUGH NOT STRIKINGLY, WITH THE ABSENCE OF SOMATIC MUTATIONS IN IGVH GENES, SUGGESTING THAT THE LATTER MAY BE DUE EITHER TO EPIGENETIC EVENTS LEADING TO AN UNSTABLE GENOME OR TO AN INHERITED DEFECT IN THE IMMUNE RESPONSE OF MALIGNANT B-CELLS. RECENT LESSONS FROM ZAP-70 EXPRESSION/PHOSPHORYLATION SUGGEST THAT SOME OF THESE MARKERS MAY REFLECT THE DEFECTIVE PATHWAYS IN B-CLL CELLS RATHER THAN BEING MARKERS OF CELL MALIGNANCY PER SE. FURTHERMORE, SPECIFIC SUBSETS OF MARKERS ARE FOUND IN PATIENT CELLS RESISTANT TO TREATMENT. CURRENT STUDIES ON GENE EXPRESSION PROFILING AND PROTEOMIC ANALYSES SHOULD SOON LEAD TO A BETTER UNDERSTANDING OF HOW THESE PATHWAYS ARE AFFECTED, ESPECIALLY IN MULTI-DRUG RESISTANT B-CLL. 2006 6 1174 36 CONTRIBUTION OF TRANSPOSABLE ELEMENTS TO TRANSGENERATIONAL EFFECTS OF CHRONIC RADIOACTIVE EXPOSURE OF NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER LIVING FOR A LONG TIME IN THE ZONE OF THE CHERNOBYL NUCLEAR DISASTER. THE ACCIDENT AT THE CHERNOBYL NUCLEAR POWER PLANT (CHNPP) LED TO THE NEGATIVE IMPACT OF CHRONIC RADIOACTIVE CONTAMINATION ON POPULATIONS OF ORGANISMS ASSOCIATED WITH THE TRANSGENERATIONAL TRANSMISSION OF GENOME INSTABILITY. WHEN THE DESTABILIZATION OF GENOME, DIFFERENT GENETIC DAMAGES OCCUR, THE ACCUMULATION OF WHICH LEADS TO THE FORMATION OF MUTATIONS, MORPHOLOGICAL ANOMALIES, AND MORTALITY IN THE OFFSPRING. THE MECHANISMS UNDERLYING THE MANIFESTATION OF TRANSGENERATIONAL EVENTS IN THE OFFSPRING OF IRRADIATED PARENTS ARE NOT WELL UNDERSTOOD. IN THIS STUDY, FOR THE FIRST TIME, THE FEATURES OF THE INFLUENCE OF TRANSPOSABLE ELEMENTS (TES) ON THE LONG-TERM BIOLOGICAL CONSEQUENCES OF THE CHNPP ARE CONSIDERED. IN THIS WORK, SPECIMENS OF D. MELANOGASTER OBTAINED FROM NATURAL POPULATIONS IN 2007 IN THE AREAS OF THE CHNPP WITH HETEROGENEOUS RADIOACTIVE CONTAMINATION WERE STUDIED. THE DESCENDANTS FROM THESE POPULATIONS WERE MAINTAINED IN LABORATORY (INBRED) CONDITIONS FOR 160 GENERATIONS. A STABLE TRANSGENERATIONAL TRANSMISSION OF DOMINANT LETHAL MUTATIONS (DLMS) TO THE OFFSPRING OF ALL STUDIED POPULATIONS WAS SHOWN. THE DLM FREQUENCIES STRONGLY WERE CORRELATED WITH THE LEVEL OF SURVIVAL OF OFFSPRING. THE MEAN FREQUENCIES OF RECESSIVE SEX-LINKED LETHAL MUTATIONS VARIED AT THE LEVEL OF SPONTANEOUS POINT MUTATIONS. THE SIMULTANEOUS PRESENCE OF P, HOBO AND I ELEMENTS INDICATES THAT THE STUDIED POPULATIONS DO NOT HAVE A DEFINITE CYTOTYPE, THEIR PHENOTYPIC STATUS IS UNSTABLE. THE BEHAVIOR OF TES IN THE GENOMES OF OFFSPRING DEPENDS NOT ONLY ON PARENTAL EXPOSURE, BUT ALSO ON ORIGIN OF POPULATION, DISTANCE TO THE CHNPP, AND INBRED CONDITIONS. THE OBTAINED RESULTS CONFIRM THE HYPOTHESIS THAT TES ARE INVOLVED IN TRANSGENERATIONAL TRANSMISSION AND ACCUMULATION OF MUTATIONS BY THE OFFSPRING OF IRRADIATED PARENTS. THE TES PATTERN PRESENT IN THE CHERNOBYL GENOMES OF D. MELANOGASTER IS A PECULIAR OF EPIGENETIC MECHANISM FOR THE REGULATION OF PLASTICITY AND ADAPTATION OF POPULATIONS LIVING FOR MANY GENERATIONS UNDER CONDITIONS OF A TECHNOGENICALLY CAUSED RADIATION BACKGROUND. 2022 7 1300 25 DEDIFFERENTIATION AND IN VIVO REPROGRAMMING OF COMMITTED CELLS IN WOUND REPAIR (REVIEW). ACCUMULATING EVIDENCE HAS SHOWN THAT CELL DEDIFFERENTIATION OR REPROGRAMMING IS A PIVOTAL PROCEDURE FOR ANIMALS TO DEAL WITH INJURY AND PROMOTE ENDOGENOUS TISSUE REPAIR. TISSUE DAMAGE IS A CRITICAL FACTOR THAT TRIGGERS CELL DEDIFFERENTIATION OR REPROGRAMMING IN VIVO. BY CONTRAST, MICROENVIRONMENTAL CHANGES, INCLUDING THE LOSS OF STEM CELLS, HYPOXIA, CELL SENESCENCE, INFLAMMATION AND IMMUNITY, CAUSED BY TISSUE DAMAGE CAN RETURN CELLS TO AN UNSTABLE STATE. IF THE WOUND PERSISTS IN THE LONG?TERM DUE TO CHRONIC DAMAGE, THEN DEDIFFERENTIATION OR REPROGRAMMING OF THE SURROUNDING CELLS MAY LEAD TO CARCINOGENESIS. IN RECENT YEARS, EXTENSIVE RESEARCH HAS BEEN PERFORMED INVESTIGATING CELL DEDIFFERENTIATION OR REPROGRAMMING IN VIVO, WHICH CAN HAVE SIGNIFICANT IMPLICATIONS FOR WOUND REPAIR, TREATMENT AND PREVENTION OF CANCER IN THE FUTURE. THE CURRENT REVIEW SUMMARIZES THE MOLECULAR EVENTS THAT ARE KNOWN TO DRIVE CELL DEDIFFERENTIATION DIRECTLY FOLLOWING TISSUE INJURY AND THE EFFECTS OF EPIGENETIC MODIFICATION ON DEDIFFERENTIATION OR REPROGRAMMING IN VIVO. IN ADDITION, THE PRESENT REVIEW EXPLORES THE INTRACELLULAR MECHANISM OF ENDOGENOUS TISSUE REPAIR AND ITS RELATIONSHIP WITH CANCER, WHICH IS ESSENTIAL FOR BALANCING THE RISK BETWEEN TISSUE REPAIR AND MALIGNANT TRANSFORMATION AFTER INJURY. 2022 8 1835 30 EFFECTS OF NON-HUMAN SPECIES IRRADIATION AFTER THE CHERNOBYL NPP ACCIDENT. THE AREA AFFECTED BY THE CHERNOBYL NUCLEAR POWER PLANT ACCIDENT IN 1986 HAS BECOME A UNIQUE TEST SITE WHERE LONG-TERM ECOLOGICAL AND BIOLOGICAL CONSEQUENCES OF A DRASTIC CHANGE IN A RANGE OF ENVIRONMENTAL FACTORS AS WELL AS TRENDS AND INTENSITY OF SELECTION ARE STUDIED IN NATURAL SETTINGS. THE CONSEQUENCES OF THE CHERNOBYL ACCIDENT FOR BIOTA VARIED FROM AN ENHANCED RATE OF MUTAGENESIS TO DAMAGE AT THE ECOSYSTEM LEVEL. THE REVIEW COMPREHENSIVELY BRINGS TOGETHER KEY DATA OF THE LONG-TERM STUDIES OF BIOLOGICAL EFFECTS IN PLANTS AND ANIMALS INHABITING OVER 20 YEARS THE CHERNOBYL NPP ZONE. THE SEVERITY OF RADIATION EFFECTS WAS STRONGLY DEPENDENT ON THE DOSE RECEIVED IN THE EARLY PERIOD AFTER THE ACCIDENT. THE MOST EXPOSED PHYTOCENOSES AND SOIL ANIMALS' COMMUNITIES EXHIBITED DOSE DEPENDENT ALTERATIONS IN THE SPECIES COMPOSITION AND REDUCTION IN BIOLOGICAL DIVERSITY. ON THE OTHER HAND, NO DECREASE IN NUMBERS OR TAXONOMIC DIVERSITY OF SMALL MAMMALS EVEN IN THE MOST RADIOACTIVE HABITAT WAS SHOWN. IN A MAJORITY OF THE STUDIES, IN BOTH PLANT AND ANIMAL POPULATIONS FROM THE CHERNOBYL ZONE, IN THE FIRST YEARS AFTER THE ACCIDENT HIGH INCREASES IN MUTATION RATES WERE DOCUMENTED. IN MOST CASES THE DOSE-EFFECT RELATIONSHIPS WERE NONLINEAR AND THE MUTATION RATES PER UNIT DOSE WERE HIGHER AT LOW DOSES AND DOSE RATES. IN SUBSEQUENT YEARS A DECLINE IN THE RADIATION BACKGROUND RATE OCCURRED FASTER THAN REDUCTION IN THE MUTATION RATE. PLANT AND ANIMAL POPULATIONS HAVE SHOWN SIGNS OF ADAPTATION TO CHRONIC EXPOSURE. IN ADAPTATION TO THE ENHANCED LEVEL OF EXPOSURE AN ESSENTIAL ROLE OF EPIGENETIC MECHANISMS OF GENE EXPRESSION REGULATION WAS SHOWN. BASED ON THE CHERNOBYL NPP ACCIDENT STUDIES, IN THE PRESENT REVIEW ATTEMPTS WERE MADE TO ASSESS MINIMUM DOSES AT WHICH ECOLOGICAL AND BIOLOGICAL EFFECTS WERE OBSERVED. 2008 9 5122 27 POSSIBLE ROLE OF FRUCTOSAMINE 3-KINASE GENOTYPING FOR THE MANAGEMENT OF DIABETIC PATIENTS. DIABETES MELLITUS IS A GLOBAL PANDEMIC AND CONTINUES TO INCREASE IN NUMBERS AND SIGNIFICANCE. SEVERAL PATHOGENIC PROCESSES ARE INVOLVED IN THE DEVELOPMENT OF SUCH DISEASE AND THESE MECHANISMS COULD BE INFLUENCED BY GENETIC, EPIGENETIC AND ENVIRONMENTAL FACTORS. NON-ENZYMATIC GLYCATION REACTIONS OF PROTEINS HAVE BEEN STRONGLY RELATED TO PATHOGENESIS OF CHRONIC DIABETIC COMPLICATIONS. THE IDENTIFICATION OF FRUCTOSAMINE 3-KINASE (FN3K), AN ENZYME INVOLVED IN PROTEIN DEGLYCATION, A NEW FORM OF PROTEIN REPAIR, IS OF GREAT INTEREST. FN3K PHOSPHORYLATES FRUCTOSAMINES ON THE THIRD CARBON OF THEIR SUGAR MOIETY, MAKING THEM UNSTABLE AND CAUSING THEM TO DETACH FROM PROTEINS, SUGGESTING A PROTECTIVE ROLE OF THIS ENZYME. MOREOVER, THE VARIABILITY IN FN3K ACTIVITY HAS BEEN ASSOCIATED WITH SOME POLYMORPHISMS IN THE FN3K GENE. HERE WE ARGUE ABOUT GENETIC STUDIES AND EVIDENCE OF FN3K INVOLVEMENT IN DIABETES, TOGETHER WITH RESULTS OF OUR ANALYSIS OF THE FN3K GENE ON A CAUCASIAN COHORT OF DIABETIC PATIENTS. PRESENT KNOWLEDGE SUGGESTS THAT FN3K COULD ACT IN CONCERT WITH OTHER MOLECULAR MECHANISMS AND MAY IMPACT ON GENE EXPRESSION AND ACTIVITY OF OTHER ENZYMES INVOLVED IN DEGLYCATION PROCESS. 2015 10 5405 29 REGULATED EXPRESSION OF P210 BCR-ABL DURING EMBRYONIC STEM CELL DIFFERENTIATION STIMULATES MULTIPOTENTIAL PROGENITOR EXPANSION AND MYELOID CELL FATE. P210 BCR-ABL IS AN ACTIVATED TYROSINE KINASE ONCOGENE ENCODED BY THE PHILADELPHIA CHROMOSOME ASSOCIATED WITH HUMAN CHRONIC MYELOGENOUS LEUKEMIA (CML). THE DISEASE REPRESENTS A CLONAL DISORDER ARISING IN THE PLURIPOTENT HEMATOPOIETIC STEM CELL. DURING THE CHRONIC PHASE, PATIENTS PRESENT WITH A DRAMATIC EXPANSION OF MYELOID CELLS AND A MILD ANEMIA. RETROVIRAL GENE TRANSFER AND TRANSGENIC EXPRESSION IN RODENTS HAVE DEMONSTRATED THE ABILITY OF BCR-ABL TO INDUCE VARIOUS TYPES OF LEUKEMIA. HOWEVER, STUDY OF HUMAN CML OR RODENT MODELS HAS NOT DETERMINED THE DIRECT AND IMMEDIATE EFFECTS OF BCR-ABL ON HEMATOPOIETIC CELLS FROM THOSE REQUIRING SECONDARY GENETIC OR EPIGENETIC CHANGES SELECTED DURING THE PATHOGENIC PROCESS. WE UTILIZED TETRACYCLINE-REGULATED EXPRESSION OF BCR-ABL FROM A PROMOTER ENGINEERED FOR ROBUST EXPRESSION IN PRIMITIVE STEM CELLS THROUGH MULTILINEAGE BLOOD CELL DEVELOPMENT IN COMBINATION WITH THE IN VITRO DIFFERENTIATION OF EMBRYONAL STEM CELLS INTO HEMATOPOIETIC ELEMENTS. OUR RESULTS DEMONSTRATE THAT BCR-ABL EXPRESSION ALONE IS SUFFICIENT TO INCREASE THE NUMBER OF MULTIPOTENT AND MYELOID LINEAGE COMMITTED PROGENITORS IN A DOSE-DEPENDENT MANNER WHILE SUPPRESSING THE DEVELOPMENT OF COMMITTED ERYTHROID PROGENITORS. THESE EFFECTS ARE REVERSIBLE UPON EXTINGUISHING BCR-ABL EXPRESSION. THESE FINDINGS ARE CONSISTENT WITH BCR-ABL BEING THE SOLE GENETIC CHANGE NEEDED FOR THE ESTABLISHMENT OF THE CHRONIC PHASE OF CML AND PROVIDE A POWERFUL SYSTEM FOR THE ANALYSIS OF ANY GENETIC CHANGE THAT ALTERS CELL GROWTH AND LINEAGE CHOICES OF THE HEMATOPOIETIC STEM CELL. 2000 11 737 28 CANCER STEM CELLS. THERE IS AN INCREASING EVIDENCE SUPPORTING THE CANCER STEM CELL HYPOTHESIS. NORMAL STEM CELLS IN THE ADULT ORGANISM ARE RESPONSIBLE FOR TISSUE RENEWAL AND REPAIR OF AGED OR DAMAGED TISSUE. A SUBSTANTIAL CHARACTERISTIC OF STEM CELLS IS THEIR ABILITY FOR SELF-RENEWAL WITHOUT LOSS OF PROLIFERATION CAPACITY WITH EACH CELL DIVISION. THE STEM CELLS ARE IMMORTAL, AND RATHER RESISTANT TO ACTION OF DRUGS. THEY ARE ABLE TO DIFFERENTIATE AND FORM SPECIFIC TYPES OF TISSUE DUE TO THE INFLUENCE OF MICROENVIRONMENTAL AND SOME OTHER FACTORS. STEM CELLS DIVIDE ASYMMETRICALLY PRODUCING TWO DAUGHTER CELLS -- ONE IS A NEW STEM CELL AND THE SECOND IS PROGENITOR CELL, WHICH HAS THE ABILITY FOR DIFFERENTIATION AND PROLIFERATION, BUT NOT THE CAPABILITY FOR SELF-RENEWAL. CANCER STEM CELLS ARE IN MANY ASPECTS SIMILAR TO THE STEM CELLS. IT HAS BEEN PROVEN THAT TUMOR CELLS ARE HETEROGENEOUS COMPRISING RARE TUMOR INITIATING CELLS AND ABUNDANT NON-TUMOR INITIATING CELLS. TUMOR INITIATING CELLS -- CANCER STEM CELLS HAVE THE ABILITY OF SELF-RENEWAL AND PROLIFERATION, ARE RESISTANT TO DRUGS, AND EXPRESS TYPICAL MARKERS OF STEM CELLS. IT IS NOT CLEAR WHETHER CANCER STEM CELLS ORIGINATE FROM NORMAL STEM CELLS IN CONSEQUENCE OF GENETIC AND EPIGENETIC CHANGES AND/OR BY REDIFFERENTIATION FROM SOMATIC TUMOR CELLS TO THE STEM-LIKE CELLS. PROBABLY BOTH MECHANISMS ARE INVOLVED IN THE ORIGIN OF CANCER STEM CELLS. DYSREGULATION OF STEM CELL SELF-RENEWAL IS A LIKELY REQUIREMENT FOR THE DEVELOPMENT OF CANCER. ISOLATION AND IDENTIFICATION OF CANCER STEM CELLS IN HUMAN TUMORS AND IN TUMOR CELL LINES HAS BEEN SUCCESSFUL. TO DATE, THE EXISTENCE OF CANCER STEM CELLS HAS BEEN PROVEN IN ACUTE AND CHRONIC MYELOID LEUKEMIA, IN BREAST CANCER, IN BRAIN TUMORS, IN LUNG CANCER AND GASTROINTESTINAL TUMORS. CANCER STEM CELL MODEL IS ALSO CONSISTENT WITH SOME CLINICAL OBSERVATIONS. ALTHOUGH STANDARD CHEMOTHERAPY KILLS MOST CELLS IN A TUMOR, CANCER STEM CELLS REMAIN VIABLE. DESPITE THE SMALL NUMBER OF SUCH CELLS, THEY MIGHT BE THE CAUSE OF TUMOR RECURRENCE, SOMETIMES MANY YEARS AFTER THE "SUCCESSFUL" TREATMENT OF PRIMARY TUMOR. GROWTH OF METASTASES IN DISTINCT AREAS OF BODY AND THEIR CELLULAR HETEROGENEITY MIGHT BE CONSEQUENCE OF CANCER STEM CELL DIFFERENTIATION AND/OR DEDIFFERENTIATION AND ASYMMETRIC DIVISION OF CANCER STEM CELLS. FURTHER CHARACTERIZATION OF CANCER STEM CELLS IS NEEDED IN ORDER TO FIND WAYS TO DESTROY THEM, WHICH MIGHT CONTRIBUTE SIGNIFICANTLY TO THE THERAPEUTIC MANAGEMENT OF MALIGNANT TUMORS. 2005 12 6528 36 TRANSCRIPTIONAL CORRELATES OF CHRONIC ALCOHOL NEUROADAPTATION IN DROSOPHILA LARVAE. WHEN PRESENTED WITH THE CHOICE, DROSOPHILA MELANOGASTER FEMALES WILL OFTEN PREFER TO LAY EGGS ON FOOD CONTAINING A SIGNIFICANT AMOUNT OF ALCOHOL. WHILE, IN SOME CASES, THIS BEHAVIORAL DECISION CAN PROVIDE A SURVIVAL ADVANTAGE TO THE DEVELOPING LARVAE, IT CAN ALSO LEAD TO DEVELOPMENTAL AND COGNITIVE PROBLEMS. ALCOHOL CONSUMPTION CAN AFFECT EXECUTIVE FUNCTIONS, EPISODIC MEMORY, AND OTHER BRAIN FUNCTION CAPACITIES. HOWEVER, IN THE FRUIT FLY, THE INITIAL COGNITIVE EFFECTS OF ALCOHOL CONSUMPTION HAVE BEEN SHOWN TO REVERSE UPON PERSISTENT EXPOSURE TO ALCOHOL. USING AN OLFACTORY CONDITIONING ASSAY WHERE AN ODORANT IS IMPLEMENTED AS A CONDITIONED STIMULUS AND PAIRED WITH A HEAT SHOCK AS AN UNCONDITIONED STIMULUS, A PREVIOUS STUDY HAS SHOWN THAT WHEN EXPOSED TO A SHORT ACUTE DOSE OF ALCOHOL, DROSOPHILA LARVAE CAN NO LONGER LEARN THIS ASSOCIATION. INTERESTINGLY, UPON PROLONGED CHRONIC ALCOHOL EXPOSURE, LARVAE SEEM TO SUCCESSFULLY AVOID THE CONDITIONED STIMULUS JUST AS WELL AS CONTROL ALCOHOL-NAIVE LARVAE, SUGGESTIVE OF ALCOHOL-INDUCED NEUROADAPTATIONS. HOWEVER, THE MECHANISMS BY WHICH DROSOPHILA ADAPT TO THE PRESENCE OF ALCOHOL REMAINS UNKNOWN. IN THIS STUDY, WE EXPLORE THE TRANSCRIPTIONAL CORRELATES OF NEUROADAPTATION IN DROSOPHILA LARVAE EXPOSED TO CHRONIC ALCOHOL TO UNDERSTAND THE GENETIC AND CELLULAR COMPONENTS RESPONSIBLE FOR THIS ADAPTATION. FOR THIS, WE EMPLOYED RNA SEQUENCING TECHNOLOGY TO EVALUATE DIFFERENCES IN GENE EXPRESSION IN THE BRAIN OF LARVAE CHRONICALLY EXPOSED TO ALCOHOL. OUR RESULTS SUGGEST THAT ALCOHOL-INDUCED NEUROADAPTATIONS ARE MODULATED BY A DIVERSE ARRAY OF SYNAPTIC GENES WITHIN THE LARVAL BRAIN THROUGH A SERIES OF EPIGENETIC MODULATORS. 2021 13 4856 25 OPTIMIZING RETROVIRAL GENE EXPRESSION FOR EFFECTIVE THERAPIES. WITH THEIR ABILITY TO INTEGRATE THEIR GENETIC MATERIAL INTO THE TARGET CELL GENOME, RETROVIRAL VECTORS (RV) OF BOTH THE GAMMA-RETROVIRAL (GAMMA-RV) AND LENTIVIRAL VECTOR (LV) CLASSES CURRENTLY REMAIN THE MOST EFFICIENT AND THUS THE SYSTEM OF CHOICE FOR ACHIEVING TRANSGENE RETENTION AND THEREFORE POTENTIALLY LONG-TERM EXPRESSION AND THERAPEUTIC BENEFIT. HOWEVER, GAMMA-RV AND LV INTEGRATION COMES AT A COST IN THAT TRANSCRIPTION UNITS WILL BE PRESENT WITHIN A NATIVE CHROMATIN ENVIRONMENT AND THUS BE SUBJECT TO EPIGENETIC EFFECTS (DNA METHYLATION, HISTONE MODIFICATIONS) THAT CAN NEGATIVELY IMPACT ON THEIR FUNCTION. INDEED, HIGHLY VARIABLE EXPRESSION AND SILENCING OF GAMMA-RV AND LV TRANSGENES ESPECIALLY RESULTING FROM PROMOTER DNA METHYLATION IS WELL DOCUMENTED AND WAS THE CAUSE OF THE FAILURE OF GENE THERAPY IN A CLINICAL TRIAL FOR X-LINKED CHRONIC GRANULOMATOUS DISEASE. THIS REVIEW WILL CRITICALLY EXPLORE THE USE OF DIFFERENT CLASSES OF GENETIC CONTROL ELEMENTS THAT CAN IN PRINCIPLE REDUCE VECTOR INSERTION SITE POSITION EFFECTS AND EPIGENETIC-MEDIATED SILENCING. THESE TRANSCRIPTIONAL REGULATORY ELEMENTS BROADLY DIVIDE THEMSELVES INTO EITHER THOSE WITH A CHROMATIN BOUNDARY OR BORDER FUNCTION (SCAFFOLD/MATRIX ATTACHMENT REGIONS, INSULATORS) OR THOSE WITH A DOMINANT CHROMATIN REMODELING AND TRANSCRIPTIONAL ACTIVATING CAPABILITY (LOCUS CONTROL REGIONS,, UBIQUITOUS CHROMATIN OPENING ELEMENTS). ALL THESE TYPES OF ELEMENTS HAVE THEIR STRENGTHS AND WEAKNESSES WITHIN THE CONSTRAINTS OF A GAMMA-RV AND LV BACKBONE, SHOWING VARYING DEGREES OF EFFICACY IN IMPROVING REPRODUCIBILITY AND STABILITY OF TRANSGENE FUNCTION. COMBINATIONS OF BOUNDARY AND CHROMATIN REMODELING; TRANSCRIPTIONAL ACTIVATING ELEMENTS, WHICH DO NOT IMPEDE VECTOR PRODUCTION; TRANSDUCTION EFFICIENCY; AND STABILITY ARE MOST LIKELY TO MEET THE REQUIREMENTS WITHIN A GENE THERAPY CONTEXT ESPECIALLY WHEN TARGETING A STEM CELL POPULATION. 2013 14 5767 29 SPECIES-SPECIFIC ROLE OF GENE-ADJACENT RETROELEMENTS IN HUMAN AND MOUSE GASTRIC CARCINOGENESIS. HELICOBACTER PYLORI (HP) INFECTION PROMOTES THE RECRUITMENT OF BONE MARROW STEM CELLS INTO CHRONIC GASTRITIS LESIONS. SOME OF THESE MARROW STEM CELLS CAN DIFFERENTIATE INTO GASTRIC EPITHELIAL CELLS AND NEOPLASTIC CELLS. WE PROPOSE THAT HP-ASSOCIATED METHYLATION COULD STABILIZE TRANS-DIFFERENTIATION OF MARROW-DERIVED STEM CELLS AND THAT AN UNSTABLE METHYLATION STATUS IS ASSOCIATED WITH A RISK OF GASTRIC CANCER. PATHOBIOLOGIC BEHAVIOR OF EXPERIMENTAL MOUSE GASTRIC CANCER IS MILD COMPARED TO INVASIVE AND METASTATIC HUMAN GASTRIC CANCER. DIFFERENCES IN EPIGENETIC STABILIZATION OF ADULT CELL PHENOTYPES BETWEEN HUMANS AND MICE COULD PROVIDE A FOUNDATION TO EXPLORE THE DEVELOPMENT OF INVASIVE AND METASTATIC GASTRIC CANCER. RETROELEMENTS ARE HIGHLY REPETITIVE SEQUENCES THAT PLAY AN ESSENTIAL ROLE IN THE GENERATION OF SPECIES DIVERSITY. IN THIS REVIEW, WE ANALYZED RETROELEMENTS ADJACENT TO HUMAN AND MOUSE HOUSEKEEPING GENES AND PROPOSED A POSSIBLE EPIGENETIC MECHANISM FOR HP-ASSOCIATED CARCINOGENESIS. 2018 15 5661 23 SEXUAL DIMORPHISM IN EPIGENOMIC RESPONSES OF STEM CELLS TO EXTREME FETAL GROWTH. EXTREME FETAL GROWTH IS ASSOCIATED WITH INCREASED SUSCEPTIBILITY TO A RANGE OF ADULT DISEASES THROUGH AN UNKNOWN MECHANISM OF CELLULAR MEMORY. WE TESTED WHETHER HERITABLE EPIGENETIC PROCESSES IN LONG-LIVED CD34(+) HAEMATOPOIETIC STEM/PROGENITOR CELLS SHOWED EVIDENCE FOR RE-PROGRAMMING ASSOCIATED WITH THE EXTREMES OF FETAL GROWTH. HERE WE SHOW THAT BOTH FETAL GROWTH RESTRICTION AND OVER-GROWTH ARE ASSOCIATED WITH GLOBAL SHIFTS TOWARDS DNA HYPERMETHYLATION, TARGETING CIS-REGULATORY ELEMENTS IN PROXIMITY TO GENES INVOLVED IN GLUCOSE HOMEOSTASIS AND STEM CELL FUNCTION. WE FIND A SEXUALLY DIMORPHIC RESPONSE; INTRAUTERINE GROWTH RESTRICTION IS ASSOCIATED WITH SUBSTANTIALLY GREATER EPIGENETIC DYSREGULATION IN MALES, WHEREAS LARGE FOR GESTATIONAL AGE GROWTH PREDOMINANTLY AFFECTS FEMALES. THE FINDINGS ARE CONSISTENT WITH EXTREME FETAL GROWTH INTERACTING WITH VARIABLE FETAL SUSCEPTIBILITY TO INFLUENCE CELLULAR AGEING AND METABOLIC CHARACTERISTICS THROUGH EPIGENETIC MECHANISMS, POTENTIALLY GENERATING BIOMARKERS THAT COULD IDENTIFY INFANTS AT HIGHER RISK FOR CHRONIC DISEASE LATER IN LIFE. 2014 16 570 29 BCR-ABL INDEPENDENT MECHANISMS OF RESISTANCE IN CHRONIC MYELOID LEUKEMIA. NOT ALL CHRONIC MYELOID LEUKEMIA (CML) PATIENTS ARE CURED WITH TYROSINE KINASE INHIBITORS (TKIS), AND A PROPORTION OF THEM DEVELOP RESISTANCE. RECENTLY, CONTINUOUS BCR-ABL GENE EXPRESSION HAS BEEN FOUND IN RESISTANT CELLS WITH UNDETECTABLE BCR-ABL PROTEIN EXPRESSION, INDICATING THAT RESISTANCE MAY OCCUR THROUGH KINASE INDEPENDENT MECHANISMS, MAINLY DUE TO THE PERSISTENCE OF LEUKEMIA STEM CELLS (LSCS). LSCS RESIDE IN THE BONE MARROW NICHE IN A QUIESCENT STATE, AND ARE CHARACTERIZED BY A HIGH HETEROGENEITY IN GENETIC, EPIGENETIC, AND TRANSCRIPTIONAL MECHANISMS. NEW APPROACHES BASED ON SINGLE CELL GENOMICS HAVE OFFERED THE OPPORTUNITY TO IDENTIFY DISTINCT SUBPOPULATIONS OF LSCS AT DIAGNOSIS AND DURING TREATMENT. IN THE ONE HAND, TKIS ARE NOT ABLE TO EFFICIENTLY KILL CML-LSCS, BUT THEY MAY BE RESPONSIBLE FOR THE MODIFICATION OF SOME LSCS CHARACTERISTICS, THUS CONTRIBUTING TO HETEROGENEITY WITHIN THE TUMOR. IN THE OTHER HAND, THE BONE MARROW NICHE IS RESPONSIBLE FOR THE INTERACTIONS BETWEEN SURROUNDING STROMAL CELLS AND LSCS, RESULTING IN THE GENERATION OF SPECIFIC SIGNALS WHICH COULD FAVOR LSCS CELL CYCLE ARREST AND ALLOW THEM TO PERSIST DURING TREATMENT WITH TKIS. ADDITIONALLY, LSCS MAY THEMSELVES ALTER THE NICHE BY EXPRESSING VARIOUS COSTIMULATORY MOLECULES AND SECRETING SUPPRESSIVE CYTOKINES, ABLE TO TARGET METABOLIC PATHWAYS, CREATE AN ANTI-APOPTOTIC ENVIRONMENT, AND ALTER IMMUNE SYSTEM FUNCTIONS. ACCORDINGLY, THE PRODUCTION OF AN IMMUNOSUPPRESSANT MILIEU MAY FACILITATE TUMOR ESCAPE FROM IMMUNE SURVEILLANCE AND INDUCE CHEMO-RESISTANCE. IN THIS REVIEW WE WILL FOCUS ON BCR-ABL-INDEPENDENT MECHANISMS, ANALYZING ESPECIALLY THOSE WITH A POTENTIAL CLINICAL IMPACT IN THE MANAGEMENT OF CML PATIENTS. 2019 17 2268 28 EPIGENETIC PROGRAMMING OF T CELLS IMPACTS IMMUNE RECONSTITUTION IN HEMATOPOIETIC STEM CELL TRANSPLANT RECIPIENTS. IMMUNE RECONSTITUTION FOLLOWING HEMATOPOIETIC STEM CELL TRANSPLANTATION (HSCT) IS CRITICAL IN PREVENTING HARMFUL SEQUELAE IN RECIPIENTS WITH CYTOMEGALOVIRUS (CMV) INFECTION. TO UNDERSTAND THE MOLECULAR MECHANISMS UNDERLYING IMMUNE RECONSTITUTION KINETICS, WE PROFILED THE TRANSCRIPTOME-CHROMATIN ACCESSIBILITY LANDSCAPE OF CMV-SPECIFIC CD8(+) T CELLS FROM HCST RECIPIENTS WITH DIFFERENT IMMUNE RECONSTITUTION EFFICIENCIES. CMV-SPECIFIC T CELLS FROM HSCT RECIPIENTS WITH STABLE ANTIVIRAL IMMUNITY EXPRESSED HIGHER LEVELS OF INTERFERON/DEFENSE RESPONSE AND CELL CYCLE GENES IN AN INTERCONNECTED NETWORK INVOLVING PI3KCG, STAT5B, NFAT, RBPJ, AND LOWER HDAC6, INCREASING CHROMATIN ACCESSIBILITY AT THE ENHANCER REGIONS OF IMMUNE AND T-CELL RECEPTOR SIGNALING PATHWAY GENES. BY CONTRAST, THE TRANSCRIPTIONAL AND EPIGENOMIC SIGNATURES OF CMV-SPECIFIC T CELLS FROM HSCT RECIPIENTS WITH UNSTABLE IMMUNE RECONSTITUTION SHOWED COMMONALITIES WITH T-CELL RESPONSES IN OTHER NONRESOLVING CHRONIC INFECTIONS. THESE SIGNATURES INCLUDED HIGHER LEVELS OF EGR AND KLF FACTORS THAT, ALONG WITH LOWER JARID2 EXPRESSION, MAINTAINED HIGHER ACCESSIBILITY AT PROMOTER AND CPG-RICH REGIONS OF GENES ASSOCIATED WITH APOPTOSIS. FURTHERMORE, EPIGENETIC TARGETING VIA INHIBITION OF HDAC6 OR JARID2 ENHANCED THE TRANSCRIPTION OF GENES ASSOCIATED WITH DIFFERENTIAL RESPONSES, SUGGESTING THAT DRUGS TARGETING EPIGENOMIC MODIFIERS MAY HAVE THERAPEUTIC POTENTIAL FOR ENHANCING IMMUNE RECONSTITUTION IN HSCT RECIPIENTS. TAKEN TOGETHER, THESE ANALYSES DEMONSTRATE THAT TRANSCRIPTION FACTORS AND CHROMATIN MODULATORS CREATE DIFFERENT CHROMATIN ACCESSIBILITY LANDSCAPES IN T CELLS OF HSCT RECIPIENTS THAT NOT ONLY AFFECT IMMEDIATE GENE EXPRESSION BUT ALSO DIFFERENTIALLY PRIME CELLS FOR RESPONSES TO ADDITIONAL SIGNALS. EPIGENETIC THERAPY MAY BE A PROMISING STRATEGY TO PROMOTE IMMUNE RECONSTITUTION IN HSCT RECIPIENTS. 2018 18 795 29 CELLULAR RESILIENCE. CELLULAR RESILIENCE DESCRIBES THE ABILITY OF A CELL TO COPE WITH ENVIRONMENTAL CHANGES SUCH AS TOXICANT EXPOSURE. IF CELLULAR METABOLISM DOES NOT COLLAPSE DIRECTLY AFTER THE HIT OR END IN PROGRAMMED CELL DEATH, THE ENSUING STRESS RESPONSES PROMOTE A NEW HOMEOSTASIS UNDER STRESS. THE PROCESSES OF REVERTING "BACK TO NORMAL" AND REVERSAL OF APOPTOSIS ("ANASTASIS") HAVE BEEN STUDIED LITTLE AT THE CELLULAR LEVEL. CELL TYPES SHOW ASTONISHINGLY SIMILAR VULNERABILITY TO MOST TOXICANTS, EXCEPT FOR THOSE THAT REQUIRE A VERY SPECIFIC TARGET, METABOLISM OR MECHANISM PRESENT ONLY IN SPECIFIC CELL TYPES. THE MAJORITY OF CHEMICALS TRIGGERS "GENERAL CYTOTOXICITY" IN ANY CELL AT SIMILAR CONCENTRATIONS. WE HYPOTHESIZE THAT CELLS DIFFER LESS IN THEIR VULNERABILITY TO A GIVEN TOXICANT THAN IN THEIR RESILIENCE (COPING WITH THE "HIT"). IN MANY CASES, CELLS DO NOT RETURN TO THE NAIVE STATE AFTER A TOXIC INSULT. THE PHENOMENA OF "PRE-CONDITIONING", "TOLERANCE" AND "HORMESIS" DESCRIBE THIS FOR LOW-DOSE EXPOSURES TO TOXICANTS THAT RENDER THE CELL MORE RESISTANT TO SUBSEQUENT HITS. THE DEFENSE AND RESILIENCE PROGRAMS INCLUDE EPIGENETIC CHANGES THAT LEAVE A "MEMORY/SCAR" - AN ALTERATION AS A CONSEQUENCE OF THE STRESS THE CELL HAS EXPERIENCED. THESE MEMORIES MIGHT HAVE LONG-TERM CONSEQUENCES, BOTH POSITIVE (RESISTANCE) AND NEGATIVE, THAT CONTRIBUTE TO CHRONIC AND DELAYED MANIFESTATIONS OF HAZARD AND, ULTIMATELY, DISEASE. THIS ARTICLE CALLS FOR MORE SYSTEMATIC ANALYSES OF HOW CELLS COPE WITH TOXIC PERTURBATIONS IN THE LONG-TERM AFTER STRESSOR WITHDRAWAL. A TECHNICAL PREREQUISITE FOR THESE ARE STABLE (ORGANOTYPIC) CULTURES AND A CHARACTERIZATION OF STRESS RESPONSE MOLECULAR NETWORKS. 2015 19 1674 24 DRIVER MUTATIONS IN LEUKEMIA PROMOTE DISEASE PATHOGENESIS THROUGH A COMBINATION OF CELL-AUTONOMOUS AND NICHE MODULATION. STUDIES OF PATIENTS WITH ACUTE MYELOID LEUKEMIA (AML) HAVE LED TO THE IDENTIFICATION OF MUTATIONS THAT AFFECT DIFFERENT CELLULAR PATHWAYS. SOME OF THESE HAVE BEEN CLASSIFIED AS PRELEUKEMIC, AND A STEPWISE EVOLUTION PROGRAM WHEREBY CELLS ACQUIRE ADDITIONAL MUTATIONS HAS BEEN PROPOSED IN THE DEVELOPMENT OF AML. HOW THE TIMING OF ACQUISITION OF THESE MUTATIONS AND THEIR IMPACT ON TRANSFORMATION AND THE BONE MARROW (BM) MICROENVIRONMENT OCCURS HAS ONLY RECENTLY BEGUN TO BE INVESTIGATED. WE SHOW THAT CONSTITUTIVE AND EARLY LOSS OF THE EPIGENETIC REGULATOR, TET2, WHEN COMBINED WITH CONSTITUTIVE ACTIVATION OF FLT3, RESULTS IN TRANSFORMATION OF CHRONIC MYELOMONOCYTIC LEUKEMIA-LIKE OR MYELOPROLIFERATIVE NEOPLASM-LIKE PHENOTYPE TO AML, WHICH IS MORE PRONOUNCED IN DOUBLE-MUTANT MICE RELATIVE TO MICE CARRYING MUTATIONS IN SINGLE GENES. FURTHERMORE, WE SHOW THAT IN PRELEUKEMIC AND LEUKEMIC MICE THERE ARE ALTERATIONS IN THE BM NICHE AND SECRETED CYTOKINES, WHICH CREATES A PERMISSIVE ENVIRONMENT FOR THE GROWTH OF MUTATION-BEARING CELLS RELATIVE TO NORMAL CELLS. 2020 20 1043 32 CLINICAL CHARACTERISTICS AND WHOLE EXOME/TRANSCRIPTOME SEQUENCING OF COEXISTING CHRONIC MYELOID LEUKEMIA AND MYELOFIBROSIS. MYELOPROLIFERATIVE NEOPLASMS (MPNS) ARE CLONAL HEMATOPOIETIC STEM CELL (HSC) DISORDERS THAT CAN BE CLASSIFIED ON THE BASIS OF GENETIC, CLINICAL, PHENOTYPIC FEATURES. GENETIC LESIONS SUCH AS JAK2 MUTATIONS AND BCR-ABL TRANSLOCATION ARE OFTEN MUTUALLY EXCLUSIVE IN MPN PATIENTS AND LEAD TO ESSENTIAL THROMBOCYTHEMIA, POLYCYTHEMIA VERA, OR MYELOFIBROSIS OR CHRONIC MYELOID LEUKEMIA, RESPECTIVELY. NEVERTHELESS, COEXISTENCE OF THESE GENETIC ABERRATIONS IN THE SAME PATIENT HAS BEEN REPORTED. WHETHER THESE ABERRATIONS OCCUR IN THE SAME STEM CELL OR A DIFFERENT CELL IS UNCLEAR, BUT AN UNSTABLE GENOME IN THE HSCS SEEMS TO BE THE COMMON ANTECEDENT. IN AN EFFORT TO CHARACTERIZE THE UNDERLYING GENETIC EVENTS THAT MIGHT CONTRIBUTE TO THE APPEARANCE OF MORE THAN ONE MPN IN A PATIENT, WE STUDIED NEOPLASTIC CELLS FROM PATIENTS WITH DUAL MPNS BY NEXT-GENERATION SEQUENCING. WE OBSERVED THAT MOST PATIENTS WITH TWO MPNS HARBORED MUTATIONS IN GENES KNOWN TO CONTRIBUTE TO CLONAL HEMATOPOIESIS THROUGH ALTERED EPIGENETIC REGULATION SUCH AS TET2, ASXL1/2, SRSF2, AND IDH2 AT VARYING FREQUENCIES (1%-47%). IN ADDITION, WE FOUND THAT SOME PATIENTS ALSO HARBORED ONCOGENIC MUTATIONS IN N/KRAS, TP53, BRAF, EZH2, AND GNAS AT LOW FREQUENCIES, WHICH PROBABLY REPRESENT CLONAL EVOLUTION. THESE FINDINGS SUPPORT THE HYPOTHESIS THAT HEMATOPOIETIC CELLS FROM MPN PATIENTS HARBOR MULTIPLE GENETIC ABERRATIONS, SOME OF WHICH CAN CONTRIBUTE TO CLONAL DOMINANCE. ACQUIRING MUTATIONS IN JAK2/CALR/MPL OR THE BCR-ABL TRANSLOCATION PROBABLY DRIVE THE ONCOGENIC PHENOTYPE TOWARDS A SPECIFIC MPN. FURTHER, WE PROPOSE THAT THE ACQUISITION OF BCR-ABL IN THESE PATIENTS IS FREQUENTLY A SECONDARY EVENT RESULTING FROM AN UNSTABLE GENOME. 2017