1 308 136 ALCOHOL AND DNA METHYLATION: AN EPIGENOME-WIDE ASSOCIATION STUDY IN BLOOD AND NORMAL BREAST TISSUE. THE BIOLOGICAL MECHANISMS DRIVING ASSOCIATIONS BETWEEN ALCOHOL CONSUMPTION AND CHRONIC DISEASES MIGHT INCLUDE EPIGENETIC MODIFICATION OF DNA METHYLATION. WE EXPLORED THE HYPOTHESIS THAT ALCOHOL CONSUMPTION IS ASSOCIATED WITH METHYLATION IN AN EPIGENOME-WIDE ASSOCIATION STUDY OF BLOOD AND NORMAL BREAST TISSUE DNA. INFINIUM HUMANMETHYLATION450 BEADCHIP (ILLUMINA INC., SAN DIEGO, CALIFORNIA) ARRAY DATA ON BLOOD DNA METHYLATION WAS EXAMINED IN A DISCOVERY SET OF 2,878 NON-HISPANIC WHITE WOMEN FROM THE SISTER STUDY (UNITED STATES, 2004-2015) WHO PROVIDED DETAILED QUESTIONNAIRE INFORMATION ON LIFETIME ALCOHOL USE. ROBUST LINEAR REGRESSION MODELING WAS USED TO IDENTIFY SIGNIFICANT ASSOCIATIONS (FALSE DISCOVERY RATE OF Q < 0.05) BETWEEN THE NUMBER OF ALCOHOLIC DRINKS PER WEEK AND DNA METHYLATION AT 5,458 CYTOSINE-PHOSPHATE-GUANINE (CPG) SITES. ASSOCIATIONS WERE REPLICATED (P < 0.05) FOR 677 CPGS IN AN INDEPENDENT SET OF 187 BLOOD DNA SAMPLES FROM THE SISTER STUDY AND FOR 628 CPGS IN AN INDEPENDENT SET OF 171 NORMAL BREAST DNA SAMPLES; 1,207 CPGS WERE REPLICATED IN EITHER BLOOD OR NORMAL BREAST, WITH 98 CPGS REPLICATED IN BOTH TISSUES. INDIVIDUAL GENE EFFECTS WERE NOTABLE FOR PHOSPHOGLYCERATE DEHYDROGENASE (PGHDH), PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (PPIF), SOLUTE CARRIER 15 (SLC15), SOLUTE CARRIER FAMILY 43 MEMBER 1 (SLC43A1), AND SOLUTE CARRIER FAMILY 7 MEMBER 11 (SLC7A11). WE ALSO FOUND THAT HIGH ALCOHOL CONSUMPTION WAS ASSOCIATED WITH SIGNIFICANTLY LOWER GLOBAL METHYLATION AS MEASURED BY THE AVERAGE OF CPGS ON THE ENTIRE ARRAY. 2019 2 5842 23 STRUCTURE OF HUMAN SP140 PHD FINGER: AN ATYPICAL FOLD INTERACTING WITH PIN1. SP140 IS A NUCLEAR LEUKOCYTE-SPECIFIC PROTEIN INVOLVED IN PRIMARY BILIARY CIRRHOSIS AND A RISK FACTOR IN CHRONIC LYMPHOCYTIC LEUKEMIA. THE PRESENCE OF SEVERAL CHROMATIN RELATED MODULES SUCH AS PLANT HOMEODOMAIN (PHD), BROMODOMAIN AND SAND DOMAIN SUGGESTS A ROLE IN CHROMATIN-MEDIATED REGULATION OF GENE EXPRESSION; HOWEVER, ITS REAL FUNCTION IS STILL ELUSIVE. HEREIN WE PRESENT THE SOLUTION STRUCTURE OF SP140-PHD FINGER AND INVESTIGATE ITS ROLE AS EPIGENETIC READER IN VITRO. SP140-PHD PRESENTS AN ATYPICAL PHD FINGER FOLD WHICH DOES NOT BIND TO HISTONE H3 TAILS BUT IS RECOGNIZED BY PEPTIDYLPROLYL ISOMERASE PIN1. PIN1 SPECIFICALLY BINDS TO A PHOSPHOPEPTIDE CORRESPONDING TO THE L3 LOOP OF SP140-PHD AND CATALYZES CIS-TRANS ISOMERIZATION OF A PTHR-PRO BOND. MOREOVER CO-IMMUNOPRECIPITATION EXPERIMENTS DEMONSTRATE FLAG-SP140 INTERACTION WITH ENDOGENOUS PIN1 IN VIVO. OVERALL THESE DATA INCLUDE SP140 IN THE LIST OF THE INCREASING NUMBER OF PIN1 BINDERS AND EXPAND THE REGULATORY POTENTIAL OF PHD FINGERS AS VERSATILE STRUCTURAL PLATFORMS FOR DIVERSIFIED INTERACTIONS. 2014 3 513 25 ASSOCIATION OF SEROTONIN TRANSPORTER GENE ALUJB METHYLATION WITH MAJOR DEPRESSION, AMYGDALA RESPONSIVENESS, 5-HTTLPR/RS25531 POLYMORPHISM, AND STRESS. DNA METHYLATION PROFILES OF THE SEROTONIN TRANSPORTER GENE (SLC6A4) HAVE BEEN SHOWN TO ALTER SLC6A4 EXPRESSION, DRIVE ANTIDEPRESSANT TREATMENT RESPONSE AND MODIFY BRAIN FUNCTIONS. THIS STUDY INVESTIGATED WHETHER METHYLATION OF AN ALUJB ELEMENT IN THE SLC6A4 PROMOTOR WAS ASSOCIATED WITH MAJOR DEPRESSIVE DISORDER (MDD), AMYGDALA REACTIVITY TO EMOTIONAL FACES, 5-HTTLPR/RS25531 POLYMORPHISM, AND RECENT STRESS. MDD PATIENTS (N=122) AND HEALTHY CONTROLS (HC, N=176) UNDERWENT FMRI DURING AN EMOTIONAL FACE-MATCHING TASK. INDIVIDUAL SLC6A4 ALUJB METHYLATION PROFILES WERE ASCERTAINED AND ASSOCIATED WITH MDD, AMYGDALA REACTIVITY, 5-HTTLPR/RS25531, AND STRESS. SLC6A4 ALUJB METHYLATION WAS SIGNIFICANTLY LOWER IN MDD COMPARED TO HC AND IN STRESSED COMPARED TO LESS STRESSED PARTICIPANTS. LOWER ALUJB METHYLATION WAS PARTICULARLY FOUND IN 5-HTTLPR/RS25531 RISK ALLELE CARRIERS UNDER STRESS AND CORRELATED WITH LESS DEPRESSIVE EPISODES. FMRI ANALYSIS REVEALED A SIGNIFICANT INTERACTION OF ALUJB METHYLATION AND DIAGNOSIS IN THE AMYGDALA, WITH MDD PATIENTS SHOWING LOWER ALUJB METHYLATION ASSOCIATED WITH DECREASED AMYGDALA REACTIVITY. WHILE NO JOINT EFFECT OF ALUJB METHYLATION AND 5-HTTLPR/RS25531 EXISTED, RISK ALLELE CARRIERS SHOWED SIGNIFICANTLY INCREASED BILATERAL AMYGDALA ACTIVATION. THESE FINDINGS SUGGEST A ROLE OF SLC6A4 ALUJB METHYLATION IN MDD, AMYGDALA REACTIVITY, AND STRESS REACTION, PARTLY INTERWOVEN WITH 5-HTTLPR/RS25531 EFFECTS. PATIENTS WITH LOW METHYLATION IN CONJUNCTION WITH A SHORTER MDD HISTORY AND DECREASED AMYGDALA REACTIVITY MIGHT FEATURE A MORE STRESS-ADAPTIVE EPIGENETIC PROCESS, MAYBE VIA THEORETICALLY POSSIBLE ENDOGENOUS ANTIDEPRESSANT-LIKE EFFECTS. IN CONTRAST, PATIENTS WITH HIGHER METHYLATION MIGHT POSSIBLY SUFFER FROM IMPAIRED EPIGENETIC ADAPTION TO CHRONIC STRESS. FURTHER, THE 5-HTTLPR/RS25531 ASSOCIATION WITH AMYGDALA ACTIVATION WAS CONFIRMED IN OUR LARGE SAMPLE. 2018 4 2271 21 EPIGENETIC READER SP140 LOSS OF FUNCTION DRIVES CROHN'S DISEASE DUE TO UNCONTROLLED MACROPHAGE TOPOISOMERASES. HOW MIS-REGULATED CHROMATIN DIRECTLY IMPACTS HUMAN IMMUNE DISORDERS IS POORLY UNDERSTOOD. SPECKLED PROTEIN 140 (SP140) IS AN IMMUNE-RESTRICTED PHD AND BROMODOMAIN-CONTAINING EPIGENETIC "READER," AND SP140 LOSS-OF-FUNCTION MUTATIONS ASSOCIATE WITH CROHN'S DISEASE (CD), MULTIPLE SCLEROSIS (MS), AND CHRONIC LYMPHOCYTIC LEUKEMIA (CLL). HOWEVER, THE RELEVANCE OF THESE MUTATIONS AND MECHANISMS UNDERLYING SP140-DRIVEN PATHOGENICITY REMAINS UNEXPLORED. USING A GLOBAL PROTEOMIC STRATEGY, WE IDENTIFIED SP140 AS A REPRESSOR OF TOPOISOMERASES (TOPS) THAT MAINTAINS HETEROCHROMATIN AND MACROPHAGE FATE. IN HUMANS AND MICE, SP140 LOSS RESULTED IN UNLEASHED TOP ACTIVITY, DE-REPRESSION OF DEVELOPMENTALLY SILENCED GENES, AND ULTIMATELY DEFECTIVE MICROBE-INDUCIBLE MACROPHAGE TRANSCRIPTIONAL PROGRAMS AND BACTERIAL KILLING THAT DRIVE INTESTINAL PATHOLOGY. PHARMACOLOGICAL INHIBITION OF TOP1/2 RESCUED THESE DEFECTS. FURTHERMORE, EXACERBATED COLITIS WAS RESTORED WITH TOP1/2 INHIBITORS IN SP140(-/-) MICE, BUT NOT WILD-TYPE MICE, IN VIVO. COLLECTIVELY, WE IDENTIFY SP140 AS A TOP REPRESSOR AND REVEAL REPURPOSING OF TOP INHIBITION TO REVERSE IMMUNE DISEASES DRIVEN BY SP140 LOSS. 2022 5 3536 21 IMMUNE CHROMATIN READER SP140 REGULATES MICROBIOTA AND RISK FOR INFLAMMATORY BOWEL DISEASE. INFLAMMATORY BOWEL DISEASE (IBD) IS DRIVEN BY HOST GENETICS AND ENVIRONMENTAL FACTORS, INCLUDING COMMENSAL MICROORGANISMS. SPECKLED PROTEIN 140 (SP140) IS AN IMMUNE-RESTRICTED CHROMATIN "READER" THAT IS ASSOCIATED WITH CROHN'S DISEASE (CD), MULTIPLE SCLEROSIS (MS), AND CHRONIC LYMPHOCYTIC LEUKEMIA (CLL). HOWEVER, THE DISEASE-CAUSING MECHANISMS OF SP140 REMAIN UNDEFINED. HERE, WE IDENTIFY AN IMMUNE-INTRINSIC ROLE FOR SP140 IN REGULATING PHAGOCYTIC DEFENSE RESPONSES TO PREVENT THE EXPANSION OF INFLAMMATORY BACTERIA. MICE HARBORING ALTERED MICROBIOTA DUE TO HEMATOPOIETIC SP140 DEFICIENCY EXHIBITED SEVERE COLITIS THAT WAS TRANSMISSIBLE UPON COHOUSING AND AMELIORATED WITH ANTIBIOTICS. LOSS OF SP140 RESULTS IN BLOOMS OF PROTEOBACTERIA, INCLUDING HELICOBACTER IN SP140(-/-) MICE AND ENTEROBACTERIACEAE IN HUMANS BEARING THE CD-ASSOCIATED SP140 LOSS-OF-FUNCTION VARIANT. PHAGOCYTES FROM PATIENTS WITH THE SP140 LOSS-OF-FUNCTION VARIANT AND SP140(-/-) MICE EXHIBITED ALTERED ANTIMICROBIAL DEFENSE PROGRAMS REQUIRED FOR CONTROL OF PATHOBIONTS. THUS, MUTATIONS WITHIN THIS EPIGENETIC READER MAY CONSTITUTE A PREDISPOSING EVENT IN HUMAN DISEASES PROVOKED BY MICROBIOTA. 2022 6 382 60 AN EPIGENOME-WIDE STUDY OF BODY MASS INDEX AND DNA METHYLATION IN BLOOD USING PARTICIPANTS FROM THE SISTER STUDY COHORT. BACKGROUND/OBJECTIVES: THE RELATIONSHIP BETWEEN OBESITY AND CHRONIC DISEASE RISK IS WELL-ESTABLISHED; THE UNDERLYING BIOLOGICAL MECHANISMS DRIVING THIS RISK INCREASE MAY INCLUDE OBESITY-RELATED EPIGENETIC MODIFICATIONS. TO EXPLORE THIS HYPOTHESIS, WE CONDUCTED A GENOME-WIDE ANALYSIS OF DNA METHYLATION AND BODY MASS INDEX (BMI) USING DATA FROM A SUBSET OF WOMEN IN THE SISTER STUDY. SUBJECTS/METHODS: THE SISTER STUDY IS A COHORT OF 50 884 US WOMEN WHO HAD A SISTER WITH BREAST CANCER BUT WERE FREE OF BREAST CANCER THEMSELVES AT ENROLLMENT. STUDY PARTICIPANTS COMPLETED EXAMINATIONS WHICH INCLUDED MEASUREMENTS OF HEIGHT AND WEIGHT, AND PROVIDED BLOOD SAMPLES. BLOOD DNA METHYLATION DATA GENERATED WITH THE ILLUMINA INFINIUM HUMANMETHYLATION27 BEADCHIP ARRAY COVERING 27,589 CPG SITES WAS AVAILABLE FOR 871 WOMEN FROM A PRIOR STUDY OF BREAST CANCER AND DNA METHYLATION. TO IDENTIFY DIFFERENTIALLY METHYLATED CPG SITES ASSOCIATED WITH BMI, WE ANALYZED THIS METHYLATION DATA USING ROBUST LINEAR REGRESSION WITH ADJUSTMENT FOR AGE AND CASE STATUS. FOR THOSE CPGS PASSING THE FALSE DISCOVERY RATE SIGNIFICANCE LEVEL, WE EXAMINED THE ASSOCIATION IN A REPLICATION SET COMPRISED OF A NON-OVERLAPPING GROUP OF 187 WOMEN FROM THE SISTER STUDY WHO HAD DNA METHYLATION DATA GENERATED USING THE INFINIUM HUMANMETHYLATION450 BEADCHIP ARRAY. ANALYSIS OF THIS EXPANDED 450 K ARRAY IDENTIFIED ADDITIONAL BMI-ASSOCIATED SITES WHICH WERE INVESTIGATED WITH TARGETED PYROSEQUENCING. RESULTS: FOUR CPG SITES REACHED GENOME-WIDE SIGNIFICANCE (FALSE DISCOVERY RATE (FDR) Q<0.05) IN THE DISCOVERY SET AND ASSOCIATIONS FOR ALL FOUR WERE SIGNIFICANT AT STRICT BONFERRONI CORRECTION IN THE REPLICATION SET. AN ADDITIONAL 23 SITES PASSED FDR IN THE REPLICATION SET AND FIVE WERE REPLICATED BY PYROSEQUENCING IN THE DISCOVERY SET. SEVERAL OF THE GENES IDENTIFIED INCLUDING ANGPT4, RORC, SOCS3, FSD2, XYLT1, ABCG1, STK39, ASB2 AND CRHR2 HAVE BEEN LINKED TO OBESITY AND OBESITY-RELATED CHRONIC DISEASES. CONCLUSIONS: OUR FINDINGS SUPPORT THE HYPOTHESIS THAT OBESITY-RELATED EPIGENETIC DIFFERENCES ARE DETECTABLE IN BLOOD AND MAY BE RELATED TO RISK OF CHRONIC DISEASE. 2017 7 1358 23 DEVELOPMENT OF RATIOMETRIC ELECTROCHEMICAL MOLECULAR SWITCHES TO ASSAY ENDOGENOUS FORMALDEHYDE IN LIVE CELLS, WHOLE BLOOD AND CREATININE IN SALIVA. FORMALDEHYDE IS A REACTIVE CARBONYL SPECIES (RCS) THAT IS PRODUCED NATURALLY IN THE HUMAN BODY VIA METABOLIC AND EPIGENETIC BIOCHEMICAL PROCESSES, YET IN HIGH CONCENTRATIONS IS HIGHLY TOXIC TO THE ENVIRONMENT AS WELL AS TO LIVING ORGANISMS. THEREFORE, WE DESIGNED TWO RATIOMETRIC ELECTROCHEMICAL MOLECULAR REDOX PROBES, FORMALDEHYDE OXIDATIVE LATENT PROBE (FOLP) AND DIHYDROXY-FORMALDEHYDE OXIDATIVE LATENT PROBE (HFOLP), FOR THE SELECTIVE PROFILING OF ENDOGENOUS FORMALDEHYDE. FOLP AND HFOLP EACH UNDERWENT THE AZA-COPE REACTION WITH FORMALDEHYDE FOLLOWED BY HYDROLYSIS TO ELIMINATE UNMASK REDOX REPORTER N-ALKYLATED AMINOFERROCENE (AAF) TO MONITOR THEIR RESPONSE CURRENT. THE FOLP AND HFOLP SENSORS SHOWED BROAD DYNAMIC RANGES OF 0.12-1000 MUM AND 0.09-3 MM FOR FORMALDEHYDE WITH DETECTION LIMITS OF 48.2 NM AND 31.6 MUM, RESPECTIVELY. ALSO, SINCE FORMALDEHYDE IS THE BYPRODUCT OF BIOCHEMICAL REACTIONS FOR DETECTING CREATININE AND CREATININE IS AN IMPORTANT BIOMARKER FOR CHRONIC KIDNEY DISEASE (CKD), WE TESTED THE FOLP PROBE FOR ITS ABILITY TO MONITOR CREATININE. IT SUCCESSFULLY DID SO, AND THIS ABILITY WAS USED TO DEVELOP AN ELECTROCHEMICAL PLATFORM FOR THE QUANTIFICATION OF CREATININE; IT SHOWED A DYNAMIC RANGE OF 3.25-200 MUM AND A LIMIT OF DETECTION (1.3 MUM). IN ADDITION, THE FOLP-BASED ASSAY PLATFORM DELIVERED A RELIABLE ANALYTICAL PERFORMANCE FOR THE QUANTIFICATION OF FORMALDEHYDE IN HUMAN WHOLE BLOOD AND OF CREATININE IN SALIVA, AND ALSO FOR THE REAL-TIME MONITORING OF ENDOGENOUS FORMALDEHYDE SECRETION IN HELA CELLS. MOREOVER, THE CONCENTRATIONS DETERMINED USING OUR METHOD WERE FOUND TO BE CONSISTENT WITH THOSE DETERMINED USING FORMALDEHYDE AND CREATININE FLUOROMETRIC ASSAY KITS. 2021 8 4184 25 META-PREDICTION OF MTHFR GENE POLYMORPHISM-MUTATIONS, AIR POLLUTION, AND RISKS OF LEUKEMIA AMONG WORLD POPULATIONS. THE MAJOR OBJECTIVE OF THIS STUDY WAS TO EXAMINE THE ASSOCIATION BETWEEN METHYLENETETRAHYDROFOLATE REDUCTASE (MTHFR) POLYMORPHISMS AND THE RISK OF VARIOUS TYPES OF LEUKEMIAS ACROSS THE LIFESPANS OF CHILDREN AND ADULTS BY USING THE META-PREDICTIVE TECHNIQUES. THE SECONDARY OBJECTIVE WAS TO EXAMINE THE INTERACTIONS AMONG EPIGENETIC RISK FACTORS (INCLUDING AIR POLLUTION), MTHFR POLYMORPHISMS, AND THE RISKS OF DEVELOPING LEUKEMIA. WE COMPLETED A COMPREHENSIVE SEARCH OF 6 DATABASES TO FIND 54 STUDIES (10,033 LEUKEMIA CASES AND 15,835 CONTROLS) FOR MTHFR 677, AND 43 STUDIES (8,868 CASES AND 14,301 CONTROLS) FOR MTHFR 1298, PUBLISHED FROM 1999 TO 2014. THE RESULTS REVEALED THAT, IN EUROPEAN POPULATIONS; CHILDHOOD POPULATIONS; CHILDREN FROM EUROPE, EAST ASIA, AND AMERICA; AND CHILDREN WITH ACUTE LYMPHOCYTIC LEUKEMIA (ALL), MTHFR 677 POLYMORPHISMS (BOTH TT AND CT TYPES TOGETHER AND INDIVIDUALLY) ARE PROTECTIVE, WHILE CC WILDTYPE WAS LEUKEMOGENIC. IN ADDITION, MTHFR 1298 POLYMORPHISMS WERE PROTECTIVE AGAINST ALL AND ACUTE MYELOID LEUKEMIA IN EUROPEAN CHILDREN, AND IN CHRONIC MYELOID LEUKEMIA IN ALL ADULTS WORLDWIDE AND AMERICAN ADULTS. AIR POLLUTION PLAYED A ROLE IN THE INCREASED POLYMORPHISMS OF MTHFR 677 GENOTYPES IN CHILDHOOD LEUKEMIA. 2017 9 6491 39 TRAFFIC-DERIVED PARTICULATE MATTER EXPOSURE AND HISTONE H3 MODIFICATION: A REPEATED MEASURES STUDY. BACKGROUND: AIRBORNE PARTICULATE MATTER (PM) MAY INDUCE EPIGENETIC CHANGES THAT POTENTIALLY LEAD TO CHRONIC DISEASES. HISTONE MODIFICATIONS REGULATE GENE EXPRESSION BY INFLUENCING CHROMATIN STRUCTURE THAT CAN CHANGE GENE EXPRESSION STATUS. WE EVALUATED WHETHER TRAFFIC-DERIVED PM EXPOSURE IS ASSOCIATED WITH FOUR TYPES OF ENVIRONMENTALLY INDUCIBLE GLOBAL HISTONE H3 MODIFICATIONS. METHODS: THE BEIJING TRUCK DRIVER AIR POLLUTION STUDY INCLUDED 60 TRUCK DRIVERS AND 60 OFFICE WORKERS EXAMINED TWICE, 1-2 WEEKS APART, FOR AMBIENT PM(10) (BOTH DAY-OF AND 14-DAY AVERAGE EXPOSURES), PERSONAL PM(2.5), BLACK CARBON (BC), AND ELEMENTAL COMPONENTS (POTASSIUM, SULFUR, IRON, SILICON, ALUMINUM, ZINC, CALCIUM, AND TITANIUM). FOR BOTH PM(10) MEASURES, WE OBTAINED HOURLY AMBIENT PM(10) DATA FOR THE STUDY PERIOD FROM THE BEIJING MUNICIPAL ENVIRONMENTAL BUREAU'S 27 REPRESENTATIVELY DISTRIBUTED MONITORING STATIONS. WE THEN CALCULATED A 24H AVERAGE FOR EACH EXAMINATION DAY AND A MOVING AVERAGE OF AMBIENT PM(10) MEASURED IN THE 14 DAYS PRIOR TO EACH EXAMINATION. EXAMINATIONS MEASURED GLOBAL LEVELS OF H3 LYSINE 9 ACETYLATION (H3K9AC), H3 LYSINE 9 TRI-METHYLATION (H3K9ME3), H3 LYSINE 27 TRI-METHYLATION (H3K27ME3), AND H3 LYSINE 36 TRI-METHYLATION (H3K36ME3) IN BLOOD LEUKOCYTES COLLECTED AFTER WORK. WE USED ADJUSTED LINEAR MIXED-EFFECT MODELS TO EXAMINE PERCENT CHANGES IN HISTONE MODIFICATIONS PER EACH MUG/M(3) INCREASE IN PM EXPOSURE. RESULTS: IN ALL PARTICIPANTS EACH MUG/M(3) INCREASE IN 14-DAY AVERAGE AMBIENT PM(10) EXPOSURE WAS ASSOCIATED WITH LOWER H3K27ME3 (BETA=-1.1%, 95% CI: -1.6, -0.6) AND H3K36ME3 LEVELS (BETA=-0.8%, 95% CI: -1.4, -0.1). OCCUPATION-STRATIFIED ANALYSES SHOWED ASSOCIATIONS BETWEEN BC AND BOTH H3K9AC AND H3K36ME3 THAT WERE STRONGER IN OFFICE WORKERS (BETA=4.6%, 95% CI: 0.9, 8.4; AND BETA=4.1%, 95% CI: 1.3; 7.0 RESPECTIVELY) THAN IN TRUCK DRIVERS (BETA=0.1%, 95% CI: -1.3, 1.5; AND BETA=0.9%, 95% CI: -0.9, 2.7, RESPECTIVELY; BOTH P(INTERACTION) <0.05). SEX-STRATIFIED ANALYSES SHOWED ASSOCIATIONS BETWEEN EXAMINATION-DAY PM(10) AND H3K9AC, AND BETWEEN BC AND H3K9ME3, WERE STRONGER IN WOMEN (BETA=10.7%, 95% CI: 5.4, 16.2; AND BETA=7.5%, 95% CI: 1.2, 14.2, RESPECTIVELY) THAN IN MEN (BETA=1.4%, 95% CI: -0.9, 3.7; AND BETA=0.9%, 95% CI: -0.9, 2.7, RESPECTIVELY; BOTH P(INTERACTION) <0.05). WE OBSERVED NO ASSOCIATIONS BETWEEN PERSONAL PM(2.5) OR ELEMENTAL COMPONENTS AND HISTONE MODIFICATIONS. CONCLUSIONS: OUR RESULTS SUGGEST A POSSIBLE ROLE OF GLOBAL HISTONE H3 MODIFICATIONS IN EFFECTS OF TRAFFIC-DERIVED PM EXPOSURES, PARTICULARLY BC EXPOSURE. FUTURE STUDIES SHOULD ASSESS THE ROLES OF THESE MODIFICATIONS IN HUMAN DISEASES AND AS POTENTIAL MEDIATORS OF AIR POLLUTION-INDUCED DISEASE, IN PARTICULAR BC EXPOSURE. 2017 10 475 37 ARSENIC EXPOSURE AND HUMAN BLOOD DNA METHYLATION AND HYDROXYMETHYLATION PROFILES IN TWO DIVERSE POPULATIONS FROM BANGLADESH AND SPAIN. BACKGROUND: ASSOCIATIONS OF ARSENIC (AS) WITH THE SUM OF 5-MC AND 5-HMC LEVELS HAVE BEEN REPORTED; HOWEVER, AS EXPOSURE-RELATED DIFFERENCES OF THE SEPARATED 5-MC AND 5-HMC MARKERS HAVE RARELY BEEN STUDIED. METHODS: IN THIS STUDY, WE EVALUATED THE ASSOCIATION OF ARSENIC EXPOSURE BIOMARKERS AND 5-MC AND 5-HMC IN 30 HEALTHY MEN (43-55 YEARS) FROM THE ARAGON WORKERS HEALTH STUDY (AWHS) (SPAIN) AND 31 HEALTHY MEN (31-50 YEARS) FROM THE FOLIC ACID AND CREATININE TRIAL (FACT) (BANGLADESH). WE CONDUCTED 5-MC AND 5-HMC PROFILING USING INFINIUM METHYLATIONEPIC ARRAYS, ON PAIRED STANDARD AND MODIFIED (OX-BS IN AWHS AND TAB IN FACT) BISULFITE CONVERTED BLOOD DNA SAMPLES. RESULTS: THE MEDIAN FOR THE SUM OF URINE INORGANIC AND METHYLATED AS SPECIES (SIGMAAS) (MUG/L) WAS 12.5 FOR AWHS AND 89.6 FOR FACT. THE MEDIAN OF BLOOD AS (MUG/L) WAS 8.8 FOR AWHS AND 10.2 FOR FACT. AT A STATISTICAL SIGNIFICANCE P-VALUE CUT-OFF OF 0.01, THE DIFFERENTIALLY METHYLATED (DMP) AND HYDROXYMETHYLATED (DHP) POSITIONS WERE MOSTLY LOCATED IN DIFFERENT GENOMIC SITES. SEVERAL DMPS AND DHPS WERE CONSISTENTLY FOUND IN AWHS AND FACT BOTH FOR URINE SIGMAAS AND BLOOD MODELS, BEING OF SPECIAL INTEREST THOSE ATTRIBUTED TO THE DIP2C GENE. THREE DMPS (ANNOTATED TO CLEC12A) FOR AWHS AND ONE DHP (ANNOTATED TO NPLOC4) FOR FACT REMAINED STATISTICALLY SIGNIFICANT AFTER FALSE DISCOVERY RATE (FDR) CORRECTION. PATHWAYS RELATED TO CHRONIC DISEASES INCLUDING CARDIOVASCULAR, CANCER AND NEUROLOGICAL WERE ENRICHED. CONCLUSIONS: WHILE WE IDENTIFIED COMMON 5-HMC AND 5-MC SIGNATURES IN TWO POPULATIONS EXPOSED TO VARYING LEVELS OF INORGANIC AS, DIFFERENCES IN AS-RELATED EPIGENETIC SITES ACROSS THE STUDY POPULATIONS MAY ADDITIONALLY REFLECT LOW AND HIGH AS-SPECIFIC ASSOCIATIONS. THIS WORK CONTRIBUTES A DEEPER UNDERSTANDING OF POTENTIAL EPIGENETIC DYSREGULATIONS OF AS. HOWEVER, FURTHER RESEARCH IS NEEDED TO CONFIRM BIOLOGICAL CONSEQUENCES ASSOCIATED WITH DIP2C EPIGENETIC REGULATION AND TO INVESTIGATE THE ROLE OF 5-HMC AND 5-MC SEPARATELY IN AS-INDUCED HEALTH DISORDERS AT DIFFERENT EXPOSURE LEVELS. 2022 11 5070 45 PHYSICAL ACTIVITY, TELEVISION VIEWING TIME, AND DNA METHYLATION IN PERIPHERAL BLOOD. INTRODUCTION: PHYSICAL ACTIVITY MAY AFFECT HEALTH VIA DNA METHYLATION. THE EPIGENETIC INFLUENCES OF SEDENTARY BEHAVIORS SUCH AS TELEVISION VIEWING ARE UNKNOWN. WE PERFORMED A GENOMEWIDE STUDY OF DNA METHYLATION IN PERIPHERAL BLOOD IN RELATION TO PHYSICAL ACTIVITY AND TELEVISION VIEWING TIME. METHODS: DNA METHYLATION WAS MEASURED USING THE ILLUMINA INFINIUM HUMANMETHYLATION450K BEADCHIP ARRAY IN BLOOD SAMPLES COLLECTED AT BASELINE (N = 5513) AND FOLLOW-UP (N = 1249) FROM PARTICIPANTS IN THE MELBOURNE COLLABORATIVE COHORT STUDY. AT BASELINE, TIMES PER WEEK OF LEISURE-TIME PHYSICAL ACTIVITY WERE SELF-REPORTED. AT FOLLOW-UP, THE INTERNATIONAL PHYSICAL ACTIVITY QUESTIONNAIRE WAS USED TO ASSESS MET-HOURS PER WEEK OF TOTAL AND LEISURE-TIME PHYSICAL ACTIVITY AND HOURS PER DAY OF TELEVISION VIEWING TIME. LINEAR MIXED MODELS WERE USED TO ASSESS ASSOCIATIONS BETWEEN PHYSICAL ACTIVITY AND TELEVISION VIEWING MEASURES AND DNA METHYLATION AT INDIVIDUAL CPG SITES, ADJUSTED FOR POTENTIAL CONFOUNDERS AND BATCH EFFECTS. RESULTS: AT FOLLOW-UP, TOTAL PHYSICAL ACTIVITY WAS ASSOCIATED WITH DNA METHYLATION AT CG10266336 (P = 6.0 X 10), ANNOTATED TO THE SAA2 GENE. WEAKER EVIDENCE OF ASSOCIATIONS (P < 1.0 X 10) WERE OBSERVED FOR AN ADDITIONAL 14 CPG SITES WITH TOTAL PHYSICAL ACTIVITY, FOR 7 CPG SITES WITH LEISURE-TIME PHYSICAL ACTIVITY, AND FOR 9 CPG SITES WITH TELEVISION VIEWING TIME. CHANGES IN LEISURE-TIME PHYSICAL ACTIVITY BETWEEN BASELINE AND FOLLOW-UP WERE ASSOCIATED WITH METHYLATION CHANGES (P < 0.05) AT FOUR OF THE SEVEN CPG SITES WITH WEAKER EVIDENCE OF CROSS-SECTIONAL ASSOCIATIONS WITH LEISURE-TIME PHYSICAL ACTIVITY. CONCLUSION: PHYSICAL ACTIVITY AND TELEVISION VIEWING MAY BE ASSOCIATED WITH BLOOD DNA METHYLATION, A POTENTIAL PATHWAY TO CHRONIC DISEASE DEVELOPMENT. FURTHER RESEARCH USING ACCELEROMETER DATA AND LARGER SAMPLE SIZES IS WARRANTED. 2019 12 3303 26 HIGH-FREQUENCY P16(INK) (4A) PROMOTER METHYLATION IS ASSOCIATED WITH HISTONE METHYLTRANSFERASE SETDB1 EXPRESSION IN SPORADIC CUTANEOUS MELANOMA. EPIGENETIC MECHANISMS PARTICIPATE IN MELANOMA DEVELOPMENT AND PROGRESSION. THE EFFECT OF HISTONE MODIFICATIONS AND THEIR CATALYSING ENZYMES OVER EUCHROMATIC PROMOTER DNA METHYLATION IN MELANOMA REMAINS UNCLEAR. THIS STUDY INVESTIGATED THE POTENTIAL ASSOCIATION OF P16(INK) (4A) PROMOTER METHYLATION WITH HISTONE METHYLTRANSFERASE SETDB1 EXPRESSION IN GREEK PATIENTS WITH SPORADIC MELANOMA AND THEIR CORRELATION WITH CLINICOPATHOLOGICAL CHARACTERISTICS. PROMOTER METHYLATION WAS DETECTED BY METHYLATION-SPECIFIC PCR IN 100 PERIPHERAL BLOOD SAMPLES AND 58 MELANOMA TISSUES FROM THE SAME PATIENTS. CELL PROLIFERATION (KI-67 INDEX), P16(INK) (4A) AND SETDB1 EXPRESSION WERE EVALUATED BY IMMUNOHISTOCHEMISTRY. HIGH-FREQUENCY PROMOTER METHYLATION (25.86%) WAS OBSERVED IN TISSUE SAMPLES AND CORRELATED WITH INCREASED CELL PROLIFERATION (P = 0.0514). P16(INK) (4A) PROMOTER METHYLATION WAS HIGHER IN VERTICAL GROWTH-PHASE (60%) MELANOMAS THAN IN RADIAL (40%, P = 0.063) AND THOSE DISPLAYING EPIDERMAL INVOLVEMENT (P = 0.046). IMPORTANTLY, P16(INK) (4A) METHYLATION CORRELATED WITH INCREASED MELANOMA THICKNESS ACCORDING TO BRESLOW INDEX (P = 0.0495) AND MARGINALLY WITH INCREASED CLARK LEVEL (I/II VS III/IV/V, P = 0.070). LOW (1-30%) P16(INK) (4A) EXPRESSION WAS DETECTED AT THE MAJORITY (19 OF 54) OF MELANOMA CASES (35.19%), BEING MARGINALLY CORRELATED WITH TUMOR LYMPHOCYTIC INFILTRATION (P = 0.078). SETDB1 NUCLEAR IMMUNOREACTIVITY WAS OBSERVED IN 47 OF 57 (82.46%) CASES, WHEREAS 27 OF 57 (47.37%) SHOWED CYTOPLASMIC IMMUNOEXPRESSION. CYTOPLASMIC SETDB1 EXPRESSION CORRELATED WITH HIGHER FREQUENCY OF P16(INK) (4A) METHYLATION AND P16(INK) (4A) EXPRESSION (P = 0.033, P = 0.011, RESPECTIVELY). INCREASED NUCLEAR SETDB1 LEVELS WERE ASSOCIATED WITH HIGHER MITOTIC COUNT (0-5/MM(2) VS >5/MM(2) , P = 0.0869), ADVANCED CLARK LEVEL (III-V, P = 0.0380), EPIDERMAL INVOLVEMENT (P = 0.0331) AND THE NON-CHRONIC SUN EXPOSURE-ASSOCIATED MELANOMA TYPE (P = 0.0664). OUR DATA DEMONSTRATE FOR THE FIRST TIME THE ASSOCIATION OF HISTONE METHYLTRANSFERASE SETDB1 WITH FREQUENT METHYLATION OF THE EUCHROMATIC P16(INK) (4A) PROMOTER AND SEVERAL PROGNOSTIC PARAMETERS IN MELANOMAS. 2014 13 1529 36 DNA METHYLATION CHANGES IN WHOLE BLOOD AND CD16+ NEUTROPHILS IN RESPONSE TO CHRONIC FOLIC ACID SUPPLEMENTATION IN WOMEN OF CHILDBEARING AGE. FOLATE, A WATER-SOLUBLE VITAMIN, IS A KEY SOURCE OF ONE-CARBON GROUPS FOR DNA METHYLATION, BUT STUDIES OF THE DNA METHYLATION RESPONSE TO SUPPLEMENTAL FOLIC ACID YIELD INCONSISTENT RESULTS. THESE STUDIES ARE COMMONLY CONDUCTED USING WHOLE BLOOD, WHICH CONTAINS A MIXED POPULATION OF WHITE BLOOD CELLS THAT HAVE BEEN SHOWN TO CONFOUND RESULTS. THE OBJECTIVE OF THIS STUDY WAS TO DETERMINE IF CD16+ NEUTROPHILS MAY PROVIDE MORE SPECIFIC DATA THAN WHOLE BLOOD FOR IDENTIFYING DNA METHYLATION RESPONSE TO CHRONIC FOLIC ACID SUPPLEMENTATION. THE STUDY WAS PERFORMED IN NORMAL WEIGHT (BMI 18.5 - 24.9 KG/M2) WOMEN (18 - 35 Y; N = 12), WITH BLOOD SAMPLES TAKEN BEFORE AND AFTER 8 WEEKS OF FOLIC ACID SUPPLEMENTATION AT 800 MUG/DAY. DNA METHYLATION PATTERNS FROM WHOLE BLOOD AND ISOLATED CD16+ NEUTROPHILS WERE MEASURED ACROSS >485,000 CPG SITES THROUGHOUT THE GENOME USING THE INFINIUM HUMANMETHYLATION450 BEADCHIP. OVER THE COURSE OF THE 8-WEEK SUPPLEMENTATION, 6746 AND 7513 CPG SITES CHANGED (P < 0.05) IN WHOLE BLOOD AND CD16+ NEUTROPHILS, RESPECTIVELY. DNA METHYLATION DECREASED IN 68.4% (WHOLE BLOOD) AND 71.8% (CD16+ NEUTROPHILS) OF THESE SITES. THERE WERE ONLY 182 CPG SITES THAT CHANGED IN BOTH THE WHOLE BLOOD AND CD16+ NEUTROPHILS, 139 OF WHICH CHANGED IN THE SAME DIRECTION. THESE RESULTS SUGGEST THAT THE GENOME-WIDE DNA METHYLATION RESPONSE TO CHRONIC FOLIC ACID SUPPLEMENTATION IS DIFFERENT BETWEEN WHOLE BLOOD AND CD16+ NEUTROPHILS AND THAT A SINGLE WHITE BLOOD CELL TYPE MAY FUNCTION AS A MORE SPECIFIC EPIGENETIC REPORTER OF FOLATE STATUS THAN WHOLE BLOOD. 2017 14 3574 29 IMPACT OF METHIONINE SYNTHASE REDUCTASE POLYMORPHISMS IN CHRONIC MYELOID LEUKEMIA PATIENTS. INTRODUCTION: METABOLISM METHIONINE AND OF FOLATE PLAY A VITAL FUNCTION IN CELLULAR METHYLATION REACTIONS, DNA SYNTHESIS AND EPIGENETIC PROCESS.HOWEVER, POLYMORPHISMS OF METHIONINE HAVE RECEIVED MUCH ATTENTION IN RECENT MEDICAL GENETICS RESEARCH. OBJECTIVES: TO ASCERTAIN WHETHER THE COMMON POLYMORPHISMS OF THE MTRR (METHIONINE SYNTHASE REDUCTASE) A66G GENE COULD PLAY A ROLE IN AFFECTING SUSCEPTIBILITY TO CHRONIC MYELOID LEUKEMIA (CML) IN SUDANESE INDIVIDUALS. METHODS: IN A CASE-CONTROLLED STUDY, WE EXTRACTED AND ANALYZED DNA FROM 200 CML PATIENTS AND 100 HEALTHY CONTROL SUBJECTS BY THE PCR-RFLP METHOD. RESULTS: WE FOUND NO SIGNIFICANT DIFFERENCE IN AGE ORGENDER BETWEEN THE PATIENT GROUP AND CONTROLS. THE MTRR A66G GENOTYPES WERE DISTRIBUTED BASED ON THE HARDY-WEINBERG EQUILIBRIUM (P > 0.05). THE VARIATION OF MTRR A66G WAS LESS SIGNIFICANTLY FREQUENT IN CASES WITH CML (68.35%) THAN IN CONTROLS (87%) (OR = 0.146, 95% CI = 0.162-0.662, P < 0.002). ADDITIONALLY, AG AND GG GENOTYPES AND G ALLELE WERE REDUCING THE CML RISK (ODDS RATIO [OR] = 0.365; 95% CI [0.179-0.746]; P = 0.006; OR = 0.292; 95% CI [0.145-0.590]; P = 0.001 AND OR = 0.146; 95% CI [0.162-0.662]; P = 0.002 AND OR = 2.0; 95% CI [1.3853-2.817]; RESPECTIVELY, (P = 0.000)). CONCLUSIONS: OUR DATA DEMONSTRATED THAT HETEROZYGOUS AND HOMOZYGOUS MUTANT GENOTYPES OF MTRR POLYMORPHISMS WERE ASSOCIATED WITH DECREASED RISK OF DEVELOPING CML IN THE SUDANESE POPULATION. 2022 15 5022 28 PERSISTENT SUBCLINICAL INFLAMMATION AMONG A-BOMB SURVIVORS. PURPOSE: TO INVESTIGATE THE ASSOCIATIONS BETWEEN INFLAMMATION TESTS AND RADIATION DOSE IN A-BOMB SURVIVORS. SUBJECTS AND METHODS: SUBJECTS WERE A-BOMB SURVIVORS WHO UNDERWENT INFLAMMATION TESTS OF LEUKOCYTE COUNTS, NEUTROPHIL COUNTS, ERYTHROCYTE SEDIMENTATION RATE, CORRECTED ERYTHROCYTE SEDIMENTATION RATE, ALPHA-1 GLOBULIN, ALPHA-2 GLOBULIN AND SIALIC ACID BETWEEN 1988 AND 1992. ASSOCIATIONS WITH RADIATION DOSE (DS86) WERE ANALYZED BY REGRESSION ANALYSIS AND HETEROGENEITY AMONG INFLAMMATORY DISEASES, ANAEMIA AT EXAMINATION, OR HISTORY OF CANCER WAS ALSO TESTED. RESULTS: THE ASSOCIATIONS WITH RADIATION DOSE WERE STATISTICALLY SIGNIFICANT FOR LEUKOCYTE COUNTS (71.0MM(-3) GY(-1), P=0.015), ERYTHROCYTE SEDIMENTATION RATE (1.58 MM H(-1) GY(-1) , P = 0.0001), CORRECTED ERYTHROCYTE SEDIMENTATION RATE (1.14MM H(-1) GY(-1), P=0.0001), ALPHA-1 GLOBULIN (0.0057 G DL(-1) GY(-1), P=0.0001), ALPHA-2 GLOBULIN (0.0128 G DL(-1) GY(-1), P=0.0001), AND SIALIC ACID (1.2711 MG DL(-1) GY(-1), P=0.0001) BUT NOT FOR NEUTROPHIL COUNTS (29.9 MM(-3) GY(-1), P=0.17). HETEROGENEITY WAS NOT STATISTICALLY SIGNIFICANT. AMONG INFLAMMATORY DISEASES, ASSOCIATIONS WERE THE STRONGEST FOR CHRONIC THYROIDITIS AND CHRONIC LIVER DISEASES. CONCLUSIONS: THIS STUDY SUGGESTS STATISTICALLY SIGNIFICANT ASSOCIATION BETWEEN INFLAMMATION IN A-BOMB SURVIVORS AND RADIATION DOSE OF DURING 1988-1992. THE ASSOCIATION MIGHT CONTRIBUTE, AS AN EPIGENETIC AND/OR BYSTANDER EFFECT, TO DEVELOPMENT OF SEVERAL RADIATION-INDUCED DISORDERS. 2001 16 415 31 ANALYSIS OF RETROTRANSPOSON SUBFAMILY DNA METHYLATION REVEALS NOVEL EARLY EPIGENETIC CHANGES IN CHRONIC LYMPHOCYTIC LEUKEMIA. RETROTRANSPOSONS SUCH AS LINE-1 AND ALU COMPRISE >25% OF THE HUMAN GENOME. WHILE GLOBAL HYPOMETHYLATION OF THESE ELEMENTS HAS BEEN WIDELY REPORTED IN SOLID TUMOURS, THEIR EPIGENETIC DYSREGULATION IS YET TO BE CHARACTERISED IN CHRONIC LYMPHOCYTIC LEUKAEMIA, AND THERE HAS BEEN SCANT CONSIDERATION OF THEIR EVOLUTIONARY HISTORY THAT MEDIATES SENSITIVITY TO HYPOMETHYLATION. HERE, WE DEVELOPED AN APPROACH FOR LOCUS- AND EVOLUTIONARY SUBFAMILY-SPECIFIC ANALYSIS OF RETROTRANSPOSONS USING THE ILLUMINA INFINIUM HUMAN METHYLATION 450K MICROARRAY PLATFORM, WHICH WE APPLIED TO PUBLICLY-AVAILABLE DATASETS FROM CHRONIC LYMPHOCYTIC LEUKAEMIA AND OTHER HAEMATOLOGICAL MALIGNANCIES. WE IDENTIFIED 9,797 MICROARRAY PROBES MAPPING TO 117 LINE-1 SUBFAMILIES AND 13,130 MAPPING TO 37 ALU SUBFAMILIES. OF THESE, 10,782 WERE DIFFERENTIALLY METHYLATED (PFDR<0.05) IN CHRONIC LYMPHOCYTIC LEUKAEMIA PATIENTS (N=139) COMPARED WITH HEALTHY INDIVIDUALS (N=14), WITH ENRICHMENT AT ENHANCERS (P=0.002). DIFFERENTIAL METHYLATION WAS ASSOCIATED WITH EVOLUTIONARY AGE OF LINE-1 (R2=0.31, P=0.003) AND ALU (R2=0.74, P=0.002) ELEMENTS, WITH GREATER HYPOMETHYLATION OF OLDER SUBFAMILIES (L1M, ALUJ). LOCUS-SPECIFIC HYPOMETHYLATION WAS ASSOCIATED WITH DIFFERENTIAL EXPRESSION OF PROXIMAL GENES, INCLUDING DCLK2, HK1, ILRUN, TANK, TBCD, TNFRSF1B AND TXNRD2, WITH HIGHER EXPRESSION OF DCLK2 AND TNFRSF1B ASSOCIATED WITH REDUCED PATIENT SURVIVAL. HYPOMETHYLATION AT NINE LOCI WAS HIGHLY FREQUENT IN CHRONIC LYMPHOCYTIC LEUKAEMIA (>90% PATIENTS) BUT NOT OBSERVED IN HEALTHY INDIVIDUALS OR OTHER LEUKAEMIAS, AND WAS DETECTABLE IN BLOOD SAMPLES TAKEN PRIOR TO CHRONIC LYMPHOCYTIC LEUKAEMIA DIAGNOSIS IN 9 OF 82 INDIVIDUALS FROM THE MELBOURNE COLLABORATIVE COHORT STUDY. OUR RESULTS DEMONSTRATE DIFFERENTIAL METHYLATION OF RETROTRANSPOSONS IN CHRONIC LYMPHOCYTIC LEUKAEMIA BY THEIR EVOLUTIONARY HERITAGE THAT MODULATES EXPRESSION OF PROXIMAL GENES. 2021 17 2744 33 EXPOSURE TO VIOLENCE, CHRONIC STRESS, NASAL DNA METHYLATION, AND ATOPIC ASTHMA IN CHILDREN. BACKGROUND: EXPOSURE TO VIOLENCE (ETV) OR STRESS MAY CAUSE ASTHMA THROUGH UNCLEAR MECHANISMS. METHODS: EPIGENOME-WIDE ASSOCIATION STUDY (EWAS) OF DNA METHYLATION IN NASAL EPITHELIUM AND FOUR ETV OR CHRONIC STRESS MEASURES IN 487 PUERTO RICANS AGED 9-20 YEARS WHO PARTICIPATED IN THE EPIGENETIC VARIATION AND CHILDHOOD ASTHMA IN PUERTO RICANS STUDY [EVA-PR]). WE ASSESSED MEASURES OF ETV OR CHRONIC STRESS IN CHILDREN (ETV SCALE, GUN VIOLENCE, AND PERCEIVED STRESS) AND THEIR MOTHERS (PERCEIVED STRESS). EACH EWAS WAS CONDUCTED USING LINEAR REGRESSION, WITH CPGS AS DEPENDENT VARIABLES AND THE STRESS/VIOLENCE MEASURE AS A PREDICTOR, ADJUSTING FOR AGE, SEX, THE TOP FIVE PRINCIPAL COMPONENTS, AND SVA LATENT FACTORS. WE THEN SELECTED THE TOP 100 CPGS (BY P-VALUE) ASSOCIATED WITH EACH STRESS/VIOLENCE MEASURE IN EVA-PR AND CONDUCTED A META-ANALYSIS OF THE SELECTED CPGS AND ATOPIC ASTHMA USING DATA FROM EVA-PR AND TWO ADDITIONAL COHORTS (PROJECT VIVA AND PIAMA). RESULTS: IN THE EWAS OF STRESS/VIOLENCE IN EVA-PR, GUN VIOLENCE WAS ASSOCIATED WITH METHYLATION OF CG18961589 IN LINC01164 (BETA=0.03, P =1.28X10 (-7) ), AND MATERNAL STRESS WAS ASSOCIATED WITH METHYLATION OF CG03402351 IN SNN (BETA=0.04, P =1.69X10 (-7) ) AND CG19064846 IN PTPRN2 (BETA=0.03, P =3.36X10 (-7) ). IN A META-ANALYSIS OF THREE COHORTS, WHICH INCLUDED THE TOP CPGS ASSOCIATED WITH STRESS/VIOLENCE IN EVA-PR, CPGS IN STARD3NL, SLC35F4, TSR3, CDC42SE2, KLHL25, PLCB1, BUD13, OR2B3, GALR1, TMEM196, TEAD4 AND ANAPC13 WERE ASSOCIATED WITH ATOPIC ASTHMA AT FDR- P < 0.05. CONCLUSIONS: ETV AND CHRONIC STRESS MAY INCREASE THE RISK OF ATOPIC ASTHMA THROUGH DNA METHYLATION IN AIRWAY EPITHELIUM, THOUGH THIS NEEDS CONFIRMATION IN FUTURE LONGITUDINAL STUDIES. 2020 18 6674 30 USE OF METHYLATION PROFILING TO IDENTIFY SIGNIFICANT DIFFERENTIALLY METHYLATED GENES IN BONE MARROW MESENCHYMAL STROMAL CELLS FROM ACUTE MYELOID LEUKEMIA. THE PRESENT STUDY AIMED TO CHARACTERIZE THE EPIGENETIC ARCHITECTURE BY STUDYING THE DNA METHYLATION SIGNATURE IN BONE MARROW MESENCHYMAL STEM CELLS (BM?MSCS) FROM PATIENTS WITH ACUTE MYELOID LEUKEMIA (AML). MICROARRAY DATASET GSE79695 WAS DOWNLOADED FROM THE GENE EXPRESSION OMNIBUS DATABASE. DIFFERENTIALLY METHYLATED SITES AND DIFFERENTIALLY METHYLATED CPG ISLANDS WERE IDENTIFIED IN BM?MSC SAMPLES FROM PATIENTS WITH AML COMPARED WITH CONTROLS. MICRORNAS (MIRS) ENCODING GENES COVERING DIFFERENTIALLY METHYLATED SITES WERE FOUND AND THE REGULATION NETWORK WAS CONSTRUCTED. PATHWAY ENRICHMENT ANALYSIS OF HYPERMETHYLATED GENES AND HYPOMETHYLATED GENES WAS PERFORMED, FOLLOWED BY PROTEIN?PROTEIN INTERACTION (PPI) NETWORK CONSTRUCTION. MOREOVER, THE IDENTIFIED DIFFERENTIALLY METHYLATED GENES WERE COMPARED WITH THE LEUKEMIA?RELATED MARKER/THERAPEUTIC GENES FROM THE LITERATURE. OVERALL, 228 HYPERMETHYLATED CPG SITE PROBES COVERING 183 GENE SYMBOLS AND 523 HYPOMETHYLATED CPG SITES PROBES COVERING 362 GENE SYMBOLS WERE IDENTIFIED IN THE BM?MSCS FROM AML PATIENTS. FURTHERMORE, 4 GENES WITH CPG ISLAND HYPERMETHYLATION WERE IDENTIFIED, INCLUDING PEPTIDASE M20 DOMAIN CONTAINING 1 (PM20D1). THE HSA?MIR?596?ENCODING GENE MIR596 WAS FOUND TO BE HYPERMETHYLATED AND THE REGULATION NETWORK BASED ON HSA?MIR?596 AND ITS TARGETS (SUCH AS CYTOCHROME P450 FAMILY 1 SUBFAMILY B MEMBER 1) WAS CONSTRUCTED. HYPERMETHYLATED AND HYPOMETHYLATED GENES WERE ENRICHED IN DIFFERENT KYOTO ENCYCLOPEDIA OF GENES AND GENOMES PATHWAYS, INCLUDING 'HSA05221: ACUTE MYELOID LEUKEMIA' AND 'HSA05220: CHRONIC MYELOID LEUKEMIA', WHICH THE HYPOMETHYLATED GENE MITOGEN?ACTIVATED PROTEIN KINASE 3 (MAPK3) WAS INVOLVED IN. IN ADDITION, MAPK3, LYSINE DEMETHYLASE 2B AND RAP1A, MEMBER OF RAS ONCOGENE FAMILY WERE HUBS IN THE PPI NETWORK OF METHYLATED GENES. IN CONCLUSION, PM20D1 WITH HYPERMETHYLATION OF CPG ISLANDS MAY BE ASSOCIATED WITH THE ENERGY EXPENDITURE OF PATIENTS WITH AML. FURTHERMORE, THE ABERRANTLY HYPERMETHYLATED MIR?159?ENCODING GENE MIR159 MAY BE A POTENTIAL BIOMARKER OF AML. 2018 19 3457 27 HYPOMETHYLATION OF INTERLEUKIN-6 (IL-6) GENE INCREASES THE RISK OF ESSENTIAL HYPERTENSION: A MATCHED CASE-CONTROL STUDY. ESSENTIAL HYPERTENSION (EH) IS A CHRONIC DISEASE WITH CLEAR EPIGENETIC COMPONENT. INFLAMMATION AND ENDOTHELIAL DYSFUNCTION HAVE A GREAT ROLE IN THE DEVELOPMENT OF PERSISTENT BLOOD PRESSURE ELEVATION. THE AIM OF THIS STUDY WAS TO EXPLORE AN ASSOCIATION BETWEEN EH AND DNA METHYLATION IN PRO-INFLAMMATION CYTOKINE GENE INTERLEUKIN-6 (IL-6) DURING THE INFLAMMATORY PROCESS. WE PERFORMED METHYLATION ANALYSIS OF PERIPHERAL BLOOD DNA USING BISULPHITE PYROSEQUENCING TECHNOLOGY BETWEEN 96 EH PATIENTS AND 96 AGE- AND GENDER-MATCHED HEALTHY CONTROLS. THE PRESENT RESULTS SHOWED THAT THREE CYTOSINE-PHOSPHATE-GUANINE (CPG) SITES OF IL-6 PROMOTER CPG ISLAND HAD DIFFERENT LOWER METHYLATION IN EH GROUP COMPARED WITH CONTROLS, BUT ONLY CPG2 (58.43+/-7.53 VERSUS 62.34+/-9.65, P=0.004) AND CPG3 (51.52+/-6.18 VERSUS 57.45+/-8.29, P<0.001) HAD STATISTICAL DIFFERENCE. LOGISTIC REGRESSION ANALYSIS FOUND CPG3 HYPOMETHYLATION WAS A RISK FACTOR OF EH (ODDS RATIO=1.111, ADJUSTED P=0.004). IN ADDITION, WE FOUND HYPERMETHYLATION OF CPG1 (64.84+/-7.06 VERSUS 61.84+/-8.61) AND CPG2 (62.04+/-7.40 VERSUS 59.30+/-9.57) IN MALE COMPARED WITH FEMALE. IN MALE, WE FOUND HYPOMETHYLATION OF CPG2 (60.41+/-7.74 VERSUS 64.28+/-6.36) AND CPG3 (53.70+/-8.62 VERSUS 57.78+/-7.87) OF SMOKER VERSUS NON-SMOKER AND HYPOMETHYLATION OF CPG2 (60.89+/-7.32 VERSUS 64.70+/-7.03) AND CPG3 (53.23+/-7.99 VERSUS 60.48+/-7.58) OF DRINKER VERSUS NON-DRINKER. FURTHERMORE, THE CPG2 AND CPG3 HAD A NEGATIVE CORRELATION WITH SYSTOLIC BLOOD PRESSURE AND DIASTOLIC BLOOD PRESSURE (P<0.05). RECEIVER OPERATING CHARACTERISTIC CURVE ANALYSIS SHOWED THAT CPG2 (AREA UNDER CURVE: 0.638, P=0.001) AND CPG3 (AREA UNDER CURVE: 0.704, P<0.001) HAD A DIAGNOSTIC VALUE TO PREDICT THE RISK OF EH. IN SUMMARY, OUR STUDY REVEALED HYPOMETHYLATION OF IL-6 WAS CORRELATED WITH THE RISK OF EH IN THE POPULATION ASSESSED AND WE FOUND THE DIFFERENCES OF IL-6 PROMOTER METHYLATION IN GENDER, SMOKING AND DRINKING. 2017 20 4240 22 METHYLATION QUANTITATIVE TRAIT LOCUS ANALYSIS OF CHRONIC POSTSURGICAL PAIN UNCOVERS EPIGENETIC MEDIATORS OF GENETIC RISK. BACKGROUND: OVERLAP OF PATHWAYS ENRICHED BY SINGLE NUCLEOTIDE POLYMORPHISMS AND DNA-METHYLATION UNDERLYING CHRONIC POSTSURGICAL PAIN (CPSP), PROMPTED PILOT STUDY OF CPSP-ASSOCIATED METHYLATION QUANTITATIVE TRAIT LOCI (MEQTL). MATERIALS & METHODS: CHILDREN UNDERGOING SPINE-FUSION WERE RECRUITED PROSPECTIVELY. LOGISTIC-REGRESSION FOR GENOME- AND EPIGENOME-WIDE CPSP ASSOCIATION AND DNA-METHYLATION-SINGLE NUCLEOTIDE POLYMORPHISM ASSOCIATION/MEDIATION ANALYSES TO IDENTIFY MEQTLS WERE FOLLOWED BY FUNCTIONAL GENOMICS ANALYSES. RESULTS: CPSP (N = 20/58) AND NON-CPSP GROUPS DIFFERED IN PAIN-MEASURES. OF 2753 MEQTLS, DNA-METHYLATION AT 127 CYTOSINE-GUANINE DINUCLEOTIDES MEDIATED ASSOCIATION OF 470 MEQTLS WITH CPSP (P < 0.05). AT PARK16 LOCUS, CPSP RISK MEQTLS WERE ASSOCIATED WITH DECREASED DNA-METHYLATION AT RAB7L1 AND INCREASED DNA-METHYLATION AT PM20D1. CORRESPONDING RAB7L1/PM20D1 BLOOD EQTLS (GTEX) AND CYTOSINE-GUANINE DINUCLEOTIDE-LOCI ENRICHMENT FOR HISTONE MARKS, TRANSCRIPTION FACTOR BINDING SITES AND ATAC-SEQ PEAKS SUGGEST ALTERED TRANSCRIPTION FACTOR-BINDING. CONCLUSION: CPSP-ASSOCIATED MEQTLS INDICATE EPIGENETIC MECHANISMS MEDIATE GENETIC RISK. CLINICAL TRIAL REGISTRATION: NCT01839461, NCT01731873 (CLINICALTRIALS.GOV). 2021