1 2252 115 EPIGENETIC MODULATION OF VISCERAL NOCICEPTION. EPIGENETICS IS A PROCESS THAT ALTERS GENE ACTIVITY OR PHENOTYPE WITHOUT ANY CHANGES IN THE UNDERLYING DNA SEQUENCE OR GENOTYPE. THESE BIOLOGICAL CHANGES MAY HAVE DELETERIOUS EFFECTS AND CAN LEAD TO VARIOUS HUMAN DISEASES. ONGOING RESEARCH IS CONTINUING TO ILLUMINATE THE ROLE OF EPIGENETICS IN A VARIETY OF PATHOPHYSIOLOGIC PROCESSES. SEVERAL CATEGORIES OF EPIGENETIC MECHANISMS HAVE BEEN STUDIED INCLUDING CHROMATIN REMODELING, DNA METHYLATION, HISTONE MODIFICATION, AND NON-CODING RNA MECHANISMS. THESE EPIGENETIC CHANGES CAN HAVE A LONG-TERM EFFECT ON GENE EXPRESSION WITHOUT ANY UNDERLYING CHANGES IN THE DNA SEQUENCES. THE UNDERLYING PATHOPHYSIOLOGY OF DISORDERS OF BRAIN-GUT INTERACTION AND STRESS-INDUCED VISCERAL PAIN ARE NOT FULLY UNDERSTOOD AND THE ROLE OF EPIGENETIC MECHANISMS IN THESE DISORDERS ARE STARTING TO BE BETTER UNDERSTOOD. CURRENT WORK IS UNDERWAY TO DETERMINE HOW EPIGENETICS PLAYS A ROLE IN THE NEUROBIOLOGY OF PATIENTS WITH CHRONIC VISCERAL PAIN AND HEIGHTENED VISCERAL NOCICEPTION. MORE RECENTLY, BOTH ANIMAL MODELS AND HUMAN STUDIES HAVE SHOWN HOW EPIGENETIC REGULATION MODULATES STRESS-INDUCED VISCERAL PAIN. WHILE MUCH MORE WORK IS NEEDED TO FULLY DELINEATE THE MECHANISTIC ROLE OF EPIGENETICS IN THE NEUROBIOLOGY OF CHRONIC VISCERAL NOCICEPTION, THE CURRENT STUDY BY LOUWIES ET AL., IN NEUROGASTROENTEROLOGY AND MOTILITY PROVIDES ADDITIONAL EVIDENCE SUPPORTING THE INVOLVEMENT OF EPIGENETIC ALTERATIONS IN THE CENTRAL NUCLEUS OF THE AMYGDALA IN STRESS-INDUCED VISCERAL HYPERSENSITIVITY IN RODENTS. 2022 2 3784 23 INTERGENERATIONAL EFFECTS OF ALCOHOL: A REVIEW OF PATERNAL PRECONCEPTION ETHANOL EXPOSURE STUDIES AND EPIGENETIC MECHANISMS IN THE MALE GERMLINE. WHILE ALCOHOL USE DISORDER (AUD) IS A HIGHLY HERITABLE PSYCHIATRIC DISEASE, EFFORTS TO ELUCIDATE THAT HERITABILITY BY EXAMINING GENETIC VARIATION (E.G., SINGLE NUCLEOTIDE POLYMORPHISMS) HAVE BEEN INSUFFICIENT TO FULLY ACCOUNT FOR FAMILIAL AUD RISK. PERHAPS NOT COINCIDENTLY, THERE HAS BEEN A BURGEONING INTEREST IN NOVEL NONGENOMIC MECHANISMS OF INHERITANCE (I.E., EPIGENETICS) THAT ARE SHAPED IN THE MALE OR FEMALE GERM CELLS BY SIGNIFICANT LIFETIME EXPERIENCES SUCH AS EXPOSURE TO CHRONIC STRESS, MALNUTRITION, OR DRUGS OF ABUSE. WHILE MANY EPIDEMIOLOGICAL AND PRECLINICAL STUDIES HAVE LONG POINTED TO A ROLE FOR THE PARENTAL PRECONCEPTION ENVIRONMENT IN OFFSPRING BEHAVIOR, OVER THE LAST DECADE MANY STUDIES HAVE IMPLICATED A CAUSAL RELATIONSHIP BETWEEN THE ENVIRONMENTALLY SENSITIVE SPERM EPIGENOME AND INTERGENERATIONAL PHENOTYPES. THIS CRITICAL REVIEW WILL DETAIL THE HERITABLE EFFECTS OF ALCOHOL AND THE POTENTIAL ROLE FOR EPIGENETICS. 2019 3 5038 26 PHARMACOGENETICS OF CHRONIC PAIN AND ITS TREATMENT. THIS PAPER REVIEWS THE IMPACT OF GENETIC VARIABILITY OF DRUG METABOLIZING ENZYMES, TRANSPORTERS, RECEPTORS, AND PATHWAYS INVOLVED IN CHRONIC PAIN PERCEPTION ON THE EFFICACY AND SAFETY OF ANALGESICS AND OTHER DRUGS USED FOR CHRONIC PAIN TREATMENT. SEVERAL CANDIDATE GENES HAVE BEEN IDENTIFIED IN THE LITERATURE, WHILE THERE IS USUALLY ONLY LIMITED CLINICAL EVIDENCE SUBSTANTIATING FOR THE PENETRATION OF THE TESTING FOR THESE CANDIDATE BIOMARKERS INTO THE CLINICAL PRACTICE. FURTHER, THE PAIN-PERCEPTION REGULATION AND MODULATION ARE STILL NOT FULLY UNDERSTOOD, AND THUS MORE COMPLEX KNOWLEDGE OF GENETIC AND EPIGENETIC BACKGROUND FOR ANALGESIA WILL BE NEEDED PRIOR TO THE CLINICAL USE OF THE CANDIDATE GENETIC BIOMARKERS. 2013 4 738 32 CANCER SUSCEPTIBILITY: EPIGENETIC MANIFESTATION OF ENVIRONMENTAL EXPOSURES. CANCER IS A DISEASE THAT RESULTS FROM BOTH GENETIC AND EPIGENETIC CHANGES. DISCORDANT PHENOTYPES AND VARYING INCIDENCES OF COMPLEX DISEASES SUCH AS CANCER IN MONOZYGOTIC TWINS AS WELL AS GENETICALLY IDENTICAL LABORATORY ANIMALS HAVE LONG BEEN ATTRIBUTED TO DIFFERENCES IN ENVIRONMENTAL EXPOSURES. ACCUMULATING EVIDENCE INDICATES, HOWEVER, THAT DISPARITIES IN GENE EXPRESSION RESULTING FROM VARIABLE MODIFICATIONS IN DNA METHYLATION AND CHROMATIN STRUCTURE IN RESPONSE TO THE ENVIRONMENT ALSO PLAY A ROLE IN DIFFERENTIAL SUSCEPTIBILITY TO DISEASE. DESPITE A GROWING CONSENSUS ON THE IMPORTANCE OF EPIGENETICS IN THE ETIOLOGY OF CHRONIC HUMAN DISEASES, THE GENES MOST PRONE TO EPIGENETIC DYSREGULATION ARE INCOMPLETELY DEFINED. MOREOVER, NEITHER THE ENVIRONMENTAL AGENTS MOST STRONGLY AFFECTING THE EPIGENOME NOR THE CRITICAL WINDOWS OF VULNERABILITY TO ENVIRONMENTALLY INDUCED EPIGENETIC ALTERATIONS ARE ADEQUATELY CHARACTERIZED. THESE MAJOR DEFICITS IN KNOWLEDGE MARKEDLY IMPAIR OUR ABILITY TO UNDERSTAND FULLY THE ETIOLOGY OF CANCER AND THE IMPORTANCE OF THE EPIGENOME IN DIAGNOSING AND PREVENTING THIS DEVASTATING DISEASE. 2007 5 2945 24 GENETIC AND EPIGENETIC BASIS OF PSORIASIS PATHOGENESIS. PSORIASIS IS A CHRONIC INFLAMMATORY SKIN DISEASE WHOSE PREVALENCE VARIES AMONG DIFFERENT POPULATIONS WORLDWIDE. IT IS A COMPLEX MULTI-FACTORIAL DISEASE AND THE EXACT ETIOLOGY IS LARGELY UNKNOWN. FAMILY BASED STUDIES HAVE INDICATED A GENETIC PREDISPOSITION; HOWEVER THEY CANNOT FULLY EXPLAIN THE DISEASE PATHOGENESIS. IN ADDITION TO GENETIC SUSCEPTIBILITY, ENVIRONMENTAL AS WELL AS GENDER AND AGE RELATED FACTORS WERE ALSO BEEN FOUND TO BE ASSOCIATED. RECENTLY, IMBALANCES IN EPIGENETIC NETWORKS ARE INDICATED TO BE CAUSATIVE ELEMENTS IN PSORIASIS. THE PRESENT KNOWLEDGE OF EPIGENETIC INVOLVEMENT, MAINLY THE DNA METHYLATION, CHROMATIN MODIFICATIONS AND MIRNA DEREGULATION IS SURVEYED HERE. AN INTEGRATED APPROACH CONSIDERING GENETIC AND EPIGENETIC ANOMALIES IN THE LIGHT OF IMMUNOLOGICAL NETWORK MAY EXPLORE THE PATHOGENESIS OF PSORIASIS. 2015 6 2517 27 EPIGENETICS AND THE BURDEN OF NONCOMMUNICABLE DISEASE: A PAUCITY OF RESEARCH IN AFRICA. EPIDEMIOLOGICAL EVIDENCE SUGGESTS THAT AN ADVERSE IN UTERO ENVIRONMENT IS ASSOCIATED WITH AN INCREASED RISK FOR DEVELOPING ADULT ONSET DISEASES. THE MOLECULAR MECHANISMS FOR SUSCEPTIBILITY TO CHRONIC NONCOMMUNICABLE DISEASES ARE NOT FULLY UNDERSTOOD, ALTHOUGH RECENT RESEARCH HAS PROPOSED THAT EPIGENETIC MODIFICATIONS PLAY AN IMPORTANT ROLE IN FETAL PROGRAMMING. GENETIC AND ENVIRONMENTAL FACTORS CONTRIBUTE TO INTERINDIVIDUAL AND SPATIOTEMPORAL TISSUE-SPECIFIC METHYLATION PATTERNS. ALTHOUGH THE DIVERSE ENVIRONMENTS AND HIGH GENETIC DIVERSITY OF AFRICAN POPULATIONS PROVIDE UNPARALLELED POTENTIAL TO INVESTIGATE THE EFFECTS OF ENVIRONMENTAL CHANGE ON THE EPIGENETIC PROFILE IN HUMANS, ONLY A SMALL PERCENTAGE OF GENOMIC AND EPIGENETIC STUDIES HAVE FOCUSED ON POPULATIONS FROM THIS CONTINENT. THIS EMPHASIZES THE NEED TO BUILD CAPACITY IN AFRICA FOR RESEARCH THAT LEADS TO AN UNDERSTANDING OF THE ASSOCIATION BETWEEN GENETIC, EPIGENETIC AND ENVIRONMENTAL RISK FACTORS FOR NONCOMMUNICABLE DISEASES ON THE CONTINENT. 2015 7 4578 31 N(6) -METHYLADENOSINE MODIFICATION IN CHRONIC STRESS RESPONSE DUE TO SOCIAL HIERARCHY POSITIONING OF MICE. APPROPRIATELY RESPONDING TO STRESSFUL EVENTS IS ESSENTIAL FOR MAINTAINING HEALTH AND WELL-BEING OF ANY ORGANISM. CONCERNING SOCIAL STRESS, THE RESPONSE IS NOT ALWAYS AS STRAIGHTFORWARD AS REACTING TO PHYSICAL STRESSORS, E.G., EXTREME HEAT, AND THUS HAS TO BE BALANCED SUBTLY. PARTICULARLY, REGULATORY MECHANISMS CONTRIBUTING TO GAINING RESILIENCE IN THE FACE OF MILD SOCIAL STRESS ARE NOT FULLY DECIPHERED YET. WE EMPLOYED AN INTRINSIC SOCIAL HIERARCHY STRESS PARADIGM IN MICE OF BOTH SEXES TO IDENTIFY CRITICAL FACTORS FOR POTENTIAL COPING STRATEGIES. WHILE GLOBAL TRANSCRIPTOMIC CHANGES COULD NOT BE OBSERVED IN MALE MICE, SEVERAL GENES PREVIOUSLY REPORTED TO BE INVOLVED IN SYNAPTIC PLASTICITY, LEARNING, AND ANXIETY-LIKE BEHAVIOR WERE DIFFERENTIALLY REGULATED IN FEMALE MICE. MOREOVER, CHANGES IN N(6)-METHYLADENOSINE (M(6)A)-MODIFICATION OF MRNA OCCURRED ASSOCIATED WITH CORTICOSTERONE LEVEL IN BOTH SEXES WITH, E.G., INCREASED GLOBAL AMOUNT IN SUBMISSIVE FEMALE MICE. IN ACCORDANCE WITH THIS, METTL14 AND WTAP, SUBUNITS OF THE METHYLTRANSFERASE COMPLEX, SHOWED ELEVATED LEVELS IN SUBMISSIVE FEMALE MICE. N(6)-ADENOSYL-METHYLATION IS THE MOST PROMINENT TYPE OF MRNA METHYLATION AND PLAYS A CRUCIAL ROLE IN PROCESSES SUCH AS METABOLISM, BUT ALSO RESPONSE TO PHYSICAL STRESS. OUR FINDINGS UNDERPIN ITS ESSENTIAL ROLE BY ALSO PROVIDING A LINK TO SOCIAL STRESS EVOKED BY HIERARCHY BUILDING WITHIN SAME-SEX GROUPS. AS RECENTLY, SEARCH FOR SMALL MOLECULE MODIFIERS FOR THE RESPECTIVE CLASS OF RNA MODIFYING ENZYMES HAS STARTED, THIS MIGHT EVEN LEAD TO NEW THERAPEUTIC APPROACHES AGAINST STRESS DISORDERS. 2021 8 2594 36 EPIGENETICS OF SCHIZOPHRENIA. SCHIZOPHRENIA (SCZ) IS A CHRONIC PSYCHOTIC DISORDER THAT CONTRIBUTES SIGNIFICANTLY TO DISABILITY, AFFECTING BEHAVIOR, THOUGHT, AND COGNITION. IT HAS LONG BEEN KNOWN THAT THERE IS A HERITABLE COMPONENT TO SCHIZOPHRENIA; STUDIES IN BOTH THE PRE-GENOMIC AND POST-GENOMIC ERA, HOWEVER, HAVE FAILED TO ELUCIDATE FULLY THE GENETIC BASIS FOR THIS COMPLEX DISEASE. EPIGENETIC PROCESSES - BROADLY, THOSE WHICH CONTRIBUTE TO CHANGES IN GENE EXPRESSION WITHOUT ALTERING THE GENETIC CODE ITSELF - MAY HELP TO UNDERSTAND BETTER THE MECHANISMS LEADING TO DEVELOPMENT OF SCZ. THE OBJECTIVE OF THIS REVIEW IS TO SYNTHESIZE CURRENT KNOWLEDGE OF THE EPIGENETIC MECHANISMS INVOLVED IN SCHIZOPHRENIA. SPECIFICALLY, DNA METHYLATION STUDIES IN BOTH PERIPHERAL AND POST-MORTEM BRAIN SAMPLES IN SCZ ARE REVIEWED, AS ARE EPIGENETIC MECHANISMS INCLUDING HISTONE MODIFICATION. THE PROMISING ROLE OF NON-CODING RNA INCLUDING MICRO-RNA (MIRNA) AND ITS ROLE AS A POTENTIAL DIAGNOSTIC AND THERAPEUTIC BIOMARKER IS OUTLINED, AS ARE EPIGENETIC AGE ACCELERATION AND TELOMERE SHORTENING. FINALLY, WE DISCUSS LIMITATIONS IN CURRENT KNOWLEDGE AND PROPOSE FUTURE RESEARCH DIRECTIONS. 2021 9 357 33 ALTERNATIVE MODELS FOR TRANSGENERATIONAL EPIGENETIC INHERITANCE: MOLECULAR PSYCHIATRY BEYOND MICE AND MAN. MENTAL ILLNESS REMAINS THE GREATEST CHRONIC HEALTH BURDEN GLOBALLY WITH FEW IN-ROADS HAVING BEEN MADE DESPITE SIGNIFICANT ADVANCES IN GENOMIC KNOWLEDGE IN RECENT DECADES. THE FIELD OF PSYCHIATRY IS CONSTANTLY CHALLENGED TO BRING NEW APPROACHES AND TOOLS TO ADDRESS AND TREAT THE NEEDS OF VULNERABLE INDIVIDUALS AND SUBPOPULATIONS, AND THAT HAS TO BE SUPPORTED BY A CONTINUOUS GROWTH IN KNOWLEDGE. THE MAJORITY OF NEUROPSYCHIATRIC SYMPTOMS REFLECT COMPLEX GENE-ENVIRONMENT INTERACTIONS, WITH EPIGENETICS BRIDGING THE GAP BETWEEN GENETIC SUSCEPTIBILITY AND ENVIRONMENTAL STRESSORS THAT TRIGGER DISEASE ONSET AND DRIVE THE ADVANCEMENT OF SYMPTOMS. IT HAS MORE RECENTLY BEEN DEMONSTRATED IN PRECLINICAL MODELS THAT EPIGENETICS UNDERPINS THE TRANSGENERATIONAL INHERITANCE OF STRESS-RELATED BEHAVIOURAL PHENOTYPES IN BOTH PATERNAL AND MATERNAL LINEAGES, PROVIDING FURTHER SUPPORTING EVIDENCE FOR HERITABILITY IN HUMANS. HOWEVER, UNBIASED PROSPECTIVE STUDIES OF THIS NATURE ARE PRACTICALLY IMPOSSIBLE TO CONDUCT IN HUMANS SO PRECLINICAL MODELS REMAIN OUR BEST OPTION FOR RESEARCHING THE MOLECULAR PATHOPHYSIOLOGIES UNDERLYING MANY NEUROPSYCHIATRIC CONDITIONS. WHILE RODENTS WILL REMAIN THE DOMINANT MODEL SYSTEM FOR PRECLINICAL STUDIES (ESPECIALLY FOR ADDRESSING COMPLEX BEHAVIOURAL PHENOTYPES), THERE IS SCOPE TO EXPAND CURRENT RESEARCH OF THE MOLECULAR AND EPIGENETIC PATHOLOGIES BY USING INVERTEBRATE MODELS. HERE, WE WILL DISCUSS THE UTILITY AND ADVANTAGES OF TWO ALTERNATIVE MODEL ORGANISMS-CAENORHABDITIS ELEGANS AND DROSOPHILA MELANOGASTER-AND SUMMARISE THE COMPELLING INSIGHTS OF THE EPIGENETIC REGULATION OF TRANSGENERATIONAL INHERITANCE THAT ARE POTENTIALLY RELEVANT TO HUMAN PSYCHIATRY. 2021 10 4793 27 NUTRITIONAL FACTORS, DNA METHYLATION, AND RISK OF TYPE 2 DIABETES AND OBESITY: PERSPECTIVES AND CHALLENGES. A HEALTHY DIET IMPROVES LIFE EXPECTANCY AND HELPS TO PREVENT COMMON CHRONIC DISEASES SUCH AS TYPE 2 DIABETES (T2D) AND OBESITY. THE MECHANISMS DRIVING THESE EFFECTS ARE NOT FULLY UNDERSTOOD, BUT ARE LIKELY TO INVOLVE EPIGENETICS. EPIGENETIC MECHANISMS CONTROL GENE EXPRESSION, MAINTAINING THE DNA SEQUENCE, AND THEREFORE THE FULL GENOMIC INFORMATION INHERITED FROM OUR PARENTS, UNCHANGED. AN INTERESTING FEATURE OF EPIGENETIC CHANGES LIES IN THEIR DYNAMIC NATURE AND REVERSIBILITY. ACCORDINGLY, THEY ARE SUSCEPTIBLE TO CORRECTION THROUGH TARGETED INTERVENTIONS. HERE WE WILL REVIEW THE EVIDENCE SUPPORTING A ROLE FOR NUTRITIONAL FACTORS IN MEDIATING METABOLIC DISEASE RISK THROUGH DNA METHYLATION CHANGES. SPECIAL EMPHASIS WILL BE PLACED ON THE POTENTIAL OF USING DNA METHYLATION TRAITS AS BIOMARKERS TO PREDICT RISK OF OBESITY AND T2D AS WELL AS ON THEIR RESPONSE TO DIETARY AND PHARMACOLOGICAL (EPI-DRUG) INTERVENTIONS. 2019 11 1204 34 COULD TARGETING EPIGENETIC PROCESSES RELIEVE CHRONIC PAIN STATES? PURPOSE OF REVIEW: ABERRATIONS IN THE EPIGENETIC LANDSCAPE HAVE PREVIOUSLY BEEN ASSOCIATED WITH HUMAN DISEASES SUCH AS CANCER AND SCHIZOPHRENIA, AND DRUGS THAT TARGET EPIGENETIC PROCESSES ARE CURRENTLY USED AS THERAPEUTIC AGENTS. THIS ARTICLE WILL REVIEW THE EVIDENCE OBTAINED FROM ANIMAL STUDIES INDICATING THAT EPIGENETIC PROCESSES MIGHT REGULATE LONG-TERM PAIN STATES AND THEN DISCUSS THE POSSIBILITY THAT TARGETING EPIGENETIC MECHANISMS MIGHT BE USEFUL FOR THE MANAGEMENT OF CHRONIC PAIN. RECENT FINDINGS: RECENT ANIMAL STUDIES HAVE REPORTED INJURY-INDUCED CHANGES IN EPIGENETIC PROCESSES IN THE CENTRAL NERVOUS SYSTEM. THE PICTURE THAT HAS EMERGED IS THAT OF VERY COMPLEX EPIGENETIC PROGRAMS THAT DEPEND ON THE INJURY. HOWEVER, SOME STUDIES HAVE REPORTED THE SUCCESSFUL USE OF NONSPECIFIC EPIGENETIC TOOLS TO IMPROVE THE HYPERSENSITIVITY THAT DEVELOPS IN ANIMAL MODELS OF LONG-TERM PAIN STATES. SUMMARY: THE FIELD OF EPIGENETICS AND PAIN IS RAPIDLY EMERGING BUT FURTHER INVESTIGATION IS NEEDED TO FULLY COMPREHEND THE CONTRIBUTION OF EPIGENETIC PROCESSES TO CHRONIC PAIN STATES. ALTHOUGH THERAPEUTIC APPROACHES TARGETING THESE MECHANISMS MIGHT SEEM WORTHWHILE, WE CANNOT ASSERT THAT CURRENTLY AVAILABLE GLOBAL TOOLS SUCH AS HISTONE DEACETYLASE INHIBITORS CAN BE USED SUCCESSFULLY FOR THE LONG-TERM TREATMENT OF CHRONIC PAIN STATES. 2015 12 2917 30 GENE-ENVIRONMENT INTERACTIONS IN COMMON MENTAL DISORDERS: AN UPDATE AND STRATEGY FOR A GENOME-WIDE SEARCH. A DECADE OF RESEARCH HAS DEMONSTRATED THE EXPLANATORY POTENTIAL OF INTERPLAY BETWEEN GENETIC VARIANTS AND ENVIRONMENTAL FACTORS IN THE DEVELOPMENT OF COMMON MENTAL DISORDERS. INITIAL FINDINGS HAVE UNDERGONE TESTS OF REPLICABILITY AND SPECIFICITY. SOME GENE-ENVIRONMENT INTERACTIONS HAVE BEEN CONFIRMED, SOME HAVE NOT REPLICATED AND YET OTHER TURNED OUT TO BE MORE SPECIFIC THAN INITIALLY THOUGHT. SPECIFIC AND COMPLEMENTARY ROLES OF GENETIC FACTORS HAVE BEEN DELINEATED: A COMMON FUNCTIONAL LENGTH POLYMORPHISM IN THE SEROTONIN TRANSPORTER GENE (5-HTTLPR) MODERATED THE EFFECT OF CHILDHOOD MALTREATMENT ON CHRONIC DEPRESSION IN ADULTHOOD, BUT DID NOT SUBSTANTIALLY INFLUENCE THE EFFECTS OF ADULT STRESSFUL LIFE EVENTS ON THE ONSET OF NEW DEPRESSIVE EPISODES; IN CONTRAST, A COMMON FUNCTIONAL POLYMORPHISM IN THE BRAIN-DERIVED NEUROTROPHIC FACTOR GENE (BDNF) MODERATED THE EFFECT OF STRESSFUL LIFE EVENTS IN ADULTHOOD IN TRIGGERING NEW DEPRESSIVE EPISODES, BUT DID NOT INFLUENCE THE EFFECTS OF CHILDHOOD MALTREATMENT. MOLECULAR MECHANISMS UNDERLYING GENE-ENVIRONMENT INTERACTIONS ARE BEING UNCOVERED, INCLUDING DNA METHYLATION AND OTHER EPIGENETIC MODIFICATIONS. NEW GENE-ENVIRONMENT INTERACTIONS CONTINUE TO BE REPORTED, STILL LARGELY FROM HYPOTHESIS-DRIVEN RESEARCH. STATISTICAL AND BIOLOGICAL PRIORITIZATION STRATEGIES ARE PROPOSED TO FACILITATE A SYSTEMATIC DISCOVERY OF NOVEL GENE-ENVIRONMENT INTERACTIONS IN GENOME-WIDE ANALYSES. 2014 13 6162 22 THE GENETICS OF DIABETIC NEPHROPATHY. UP TO 40% OF PATIENTS WITH TYPE 1 AND TYPE 2 DIABETES WILL DEVELOP DIABETIC NEPHROPATHY (DN), RESULTING IN CHRONIC KIDNEY DISEASE AND POTENTIAL ORGAN FAILURE. THERE IS EVIDENCE FOR A HERITABLE GENETIC SUSCEPTIBILITY TO DN, BUT DESPITE INTENSIVE RESEARCH EFFORTS THE CAUSATIVE GENES REMAIN ELUSIVE. RECENTLY, GENOME-WIDE ASSOCIATION STUDIES HAVE DISCOVERED SEVERAL NOVEL GENETIC VARIANTS ASSOCIATED WITH DN. THE IDENTIFICATION OF SUCH VARIANTS MAY POTENTIALLY ALLOW FOR EARLY IDENTIFICATION OF AT RISK PATIENTS. HERE WE REVIEW THE CURRENT UNDERSTANDING OF THE KEY MOLECULAR MECHANISMS AND GENETIC ARCHITECTURE OF DN, AND DISCUSS THE MERITS OF EMPLOYING AN INTEGRATIVE APPROACH TO INCORPORATE DATASETS FROM MULTIPLE SOURCES (GENETICS, TRANSCRIPTOMICS, EPIGENETIC, PROTEOMIC) IN ORDER TO FULLY ELUCIDATE THE GENETIC ELEMENTS CONTRIBUTING TO THIS SERIOUS COMPLICATION OF DIABETES. 2013 14 6735 34 WHAT HAVE MECHANISTIC STUDIES TAUGHT US ABOUT CHILDHOOD ASTHMA? CHILDHOOD ASTHMA IS A CHRONIC HETEROGENEOUS SYNDROME CONSISTING OF DIFFERENT DISEASE ENTITIES OR PHENOTYPES. THE IMMUNOLOGIC AND CELLULAR PROCESSES THAT OCCUR DURING ASTHMA DEVELOPMENT ARE STILL NOT FULLY UNDERSTOOD BUT REPRESENT DISTINCT ENDOTYPES. MECHANISTIC STUDIES HAVE EXAMINED THE ROLE OF GENE EXPRESSION, PROTEIN LEVELS, AND CELL TYPES IN EARLY LIFE DEVELOPMENT AND THE MANIFESTATION OF ASTHMA, MANY UNDER THE INFLUENCE OF ENVIRONMENTAL STIMULI, WHICH CAN BE BOTH PROTECTIVE AND RISK FACTORS FOR ASTHMA. GENETIC VARIANTS CAN REGULATE GENE EXPRESSION, CONTROLLED PARTLY BY DIFFERENT EPIGENETIC MECHANISMS. IN ADDITION, ENVIRONMENTAL FACTORS, SUCH AS LIVING SPACE, NUTRITION, AND SMOKING, CAN CONTRIBUTE TO THESE MECHANISMS. ALL OF THESE FACTORS PRODUCE MODIFICATIONS IN GENE EXPRESSION THAT CAN ALTER THE DEVELOPMENT AND FUNCTION OF IMMUNE AND EPITHELIAL CELLS AND SUBSEQUENTLY DIFFERENT TRAJECTORIES OF CHILDHOOD ASTHMA. THESE EARLY CHANGES IN A PARTIALLY IMMATURE IMMUNE SYSTEM CAN HAVE DRAMATIC EFFECTS (E.G., CAUSING DYSREGULATION), WHICH IN TURN CONTRIBUTE TO DIFFERENT DISEASE ENDOTYPES AND MAY HELP TO EXPLAIN DIFFERENTIAL RESPONSIVENESS TO ASTHMA TREATMENT. IN THIS REVIEW, WE SUMMARIZE PUBLISHED STUDIES THAT HAVE AIMED TO UNCOVER DISTINCT MECHANISMS IN CHILDHOOD ASTHMA, CONSIDERING GENETICS, EPIGENETICS, AND ENVIRONMENT. MOREOVER, A DISCUSSION OF NEW, POWERFUL TOOLS FOR SINGLE-CELL IMMUNOLOGIC ASSAYS FOR PHENOTYPIC AND FUNCTIONAL ANALYSIS IS INCLUDED, WHICH PROMISE NEW MECHANISTIC INSIGHTS INTO CHILDHOOD ASTHMA DEVELOPMENT AND THERAPEUTIC AND PREVENTIVE STRATEGIES. 2023 15 2229 36 EPIGENETIC MODIFICATIONS OF INFLAMMATION IN INTERVERTEBRAL DISC DEGENERATION. INTERVERTEBRAL DISC DEGENERATION (IDD) IS A COMMON CAUSE OF JOINT-RELATED CHRONIC DISABILITY IN ELDERLY INDIVIDUALS WORLDWIDE. IT SERIOUSLY IMPACTS THE QUALITY OF LIFE AND INFLICTS A SUBSTANTIAL SOCIAL AND ECONOMIC BURDEN. THE PATHOLOGICAL MECHANISMS UNDERLYING IDD HAVE NOT BEEN FULLY REVEALED, LEADING TO LESS SATISFACTORY CLINICAL TREATMENT OUTCOMES. MORE STUDIES ARE URGENTLY NEEDED TO REVEAL ITS PRECISE PATHOLOGICAL MECHANISMS. NUMEROUS STUDIES HAVE REVEALED THAT INFLAMMATION IS CLOSELY RELATED TO VARIOUS PATHOLOGICAL PROCESSES OF IDD, INCLUDING THE CONTINUOUS LOSS OF EXTRACELLULAR MATRIX, CELL APOPTOSIS, AND SENESCENCE, INDICATING THE IMPORTANT ROLE OF INFLAMMATION IN THE PATHOLOGICAL MECHANISM OF IDD. EPIGENETIC MODIFICATIONS AFFECT THE FUNCTIONS AND CHARACTERISTICS OF GENES MAINLY THROUGH DNA METHYLATION, HISTONE MODIFICATION, NON-CODING RNA REGULATION, AND OTHER MECHANISMS, THUS HAVING A MAJOR EFFECT ON THE SURVIVAL STATE OF THE BODY. RECENTLY, THE ROLE OF EPIGENETIC MODIFICATIONS IN INFLAMMATION DURING IDD HAS BEEN ATTRACTING RESEARCH INTEREST. IN THIS REVIEW, WE SUMMARIZE THE ROLES OF DIFFERENT TYPES OF EPIGENETIC MODIFICATIONS IN INFLAMMATION DURING IDD IN RECENT YEARS, TO IMPROVE OUR UNDERSTANDING OF THE ETIOLOGY OF IDD AND TO TRANSFORM BASIC RESEARCH STRATEGY INTO A CLINICALLY EFFECTIVE TREATMENT FOR JOINT-RELATED CHRONIC DISABILITY IN ELDERLY INDIVIDUALS. 2023 16 2107 26 EPIGENETIC FACTORS IN SCHIZOPHRENIA: MECHANISMS AND EXPERIMENTAL APPROACHES. SCHIZOPHRENIA IS A CHRONIC MENTAL DISORDER THAT IS STILL POORLY UNDERSTOOD DESPITE DECADES OF STUDY. MANY FACTORS HAVE BEEN FOUND TO CONTRIBUTE TO THE PATHOGENESIS, INCLUDING NEURODEVELOPMENTAL DISTURBANCE, GENETIC RISK, AND ENVIRONMENTAL INSULT, BUT NO SINGLE ROOT CAUSE HAS EMERGED. WHILE EVIDENCE FROM TWIN STUDIES SUGGESTS A STRONG HERITABLE COMPONENT, FEW INDIVIDUAL LOCI HAVE BEEN IDENTIFIED IN GENOMEWIDE SCREENS, SUGGESTING A ROLE FOR EPIGENETIC EFFECTS. RATHER, LARGE NUMBERS OF WEAKLY ACTING LOCI MAY CUMULATIVELY INCREASE DISEASE RISK, INCLUDING SEVERAL MAPPING TO EPIGENETIC PATHWAYS. IN THIS REVIEW, WE DISCUSS MECHANISMS OF EPIGENETIC REGULATION AND EVIDENCE FOR AN EPIGENETIC CONTRIBUTION TO DISEASE PHENOTYPE. WE FURTHER DESCRIBE THE RANGE OF EXPERIMENTAL TOOLS CURRENTLY AVAILABLE TO STUDY EPIGENETIC EFFECTS ASSOCIATED WITH THE DISEASE. 2019 17 2497 23 EPIGENETICS AND ENVIRONMENTAL LUNG DISEASE. GENE-ENVIRONMENT INTERACTIONS ARE THE INDISPUTABLE CAUSE OF MOST RESPIRATORY DISEASES. HOWEVER, WE STILL HAVE VERY LIMITED UNDERSTANDING OF THE MECHANISMS THAT GUIDE THESE INTERACTIONS. ALTHOUGH THE CONCEPTUAL APPROACHES TO ENVIRONMENTAL GENOMICS WERE ESTABLISHED SEVERAL DECADES AGO, THE TOOLS ARE ONLY NOW AVAILABLE TO BETTER DEFINE THE MECHANISMS THAT UNDERLIE THE INTERACTION BETWEEN THESE IMPORTANT ETIOLOGIC FEATURES OF LUNG DISEASE. EPIGENETIC MECHANISMS CAN MEDIATE THE EFFECT OF THE ENVIRONMENT ON THE HUMAN GENOME BY CONTROLLING THE TRANSCRIPTIONAL ACTIVITY OF SPECIFIC GENES, AT SPECIFIC POINTS IN TIME, IN SPECIFIC ORGANS. IN THIS ARTICLE, WE DEMONSTRATE THE POTENTIAL IMPORTANCE OF EPIGENETIC MECHANISMS IN THE DEVELOPMENT AND PROGRESSION OF CHRONIC OBSTRUCTIVE PULMONARY DISEASE AND ASTHMA. 2010 18 3602 25 IMPRINTED GENES AND MULTIPLE SCLEROSIS: WHAT DO WE KNOW? MULTIPLE SCLEROSIS (MS) IS A CHRONIC AUTOIMMUNE NEURODEGENERATIVE DISEASE OF THE CENTRAL NERVOUS SYSTEM THAT ARISES FROM INTERPLAY BETWEEN NON-GENETIC AND GENETIC RISK FACTORS. THE EPIGENETICS FUNCTIONS AS A LINK BETWEEN THESE FACTORS, AFFECTING GENE EXPRESSION IN RESPONSE TO EXTERNAL INFLUENCE, AND THEREFORE SHOULD BE EXTENSIVELY STUDIED TO IMPROVE THE KNOWLEDGE OF MS MOLECULAR MECHANISMS. AMONG OTHERS, THE EPIGENETIC MECHANISMS UNDERLIE THE ESTABLISHMENT OF PARENT-OF-ORIGIN EFFECTS THAT APPEAR AS PHENOTYPIC DIFFERENCES DEPENDING ON WHETHER THE ALLELE WAS INHERITED FROM THE MOTHER OR FATHER. THE MOST WELL DESCRIBED MANIFESTATION OF PARENT-OF-ORIGIN EFFECTS IS GENOMIC IMPRINTING THAT CAUSES MONOALLELIC GENE EXPRESSION. IT BECOMES MORE OBVIOUS THAT DISTURBANCES IN IMPRINTED GENES AT THE LEAST AFFECTING THEIR EXPRESSION DO OCCUR IN MS AND MAY BE INVOLVED IN ITS PATHOGENESIS. IN THIS REVIEW WE WILL FOCUS ON THE POTENTIAL ROLE OF IMPRINTED GENES IN MS PATHOGENESIS. 2021 19 2608 28 EPIGENETICS: A KEY PARADIGM IN REPRODUCTIVE HEALTH. IT IS WELL ESTABLISHED THAT THERE IS A HERITABLE ELEMENT OF SUSCEPTIBILITY TO CHRONIC HUMAN AILMENTS, YET THERE IS COMPELLING EVIDENCE THAT SOME COMPONENTS OF SUCH HERITABILITY ARE TRANSMITTED THROUGH NON-GENETIC FACTORS. DUE TO THE COMPLEXITY OF REPRODUCTIVE PROCESSES, IDENTIFYING THE INHERITANCE PATTERNS OF THESE FACTORS IS NOT EASY. BUT LITTLE DOUBT EXISTS THAT BESIDES THE GENOMIC BACKBONE, A RANGE OF EPIGENETIC CUES AFFECT OUR GENETIC PROGRAMME. THE INTER-GENERATIONAL TRANSMISSION OF EPIGENETIC MARKS IS BELIEVED TO OPERATE VIA FOUR PRINCIPAL MEANS THAT DRAMATICALLY DIFFER IN THEIR INFORMATION CONTENT: DNA METHYLATION, HISTONE MODIFICATIONS, MICRORNAS AND NUCLEOSOME POSITIONING. THESE EPIGENETIC SIGNATURES INFLUENCE THE CELLULAR MACHINERY THROUGH POSITIVE AND NEGATIVE FEEDBACK MECHANISMS EITHER ALONE OR INTERACTIVELY. UNDERSTANDING HOW THESE MECHANISMS WORK TO ACTIVATE OR DEACTIVATE PARTS OF OUR GENETIC PROGRAMME NOT ONLY ON A DAY-TO-DAY BASIS BUT ALSO OVER GENERATIONS IS AN IMPORTANT AREA OF REPRODUCTIVE HEALTH RESEARCH. 2016 20 5817 26 STRESS AND THE EPIGENETIC LANDSCAPE: A LINK TO THE PATHOBIOLOGY OF HUMAN DISEASES? ACCUMULATING EVIDENCE POINTS TO A MAJOR ROLE FOR CHRONIC STRESS OF CELL RENEWAL SYSTEMS IN THE PATHOGENESIS OF IMPORTANT HUMAN DISEASES, INCLUDING CANCER, ATHEROSCLEROSIS AND DIABETES. HERE WE DISCUSS EMERGING EVIDENCE THAT EPIGENETIC ABNORMALITIES MAY MAKE SUBSTANTIAL CONTRIBUTIONS TO THESE STRESS-INDUCED PATHOLOGIES. ALTHOUGH THE MECHANISMS REMAIN TO BE FULLY ELUCIDATED, WE SUGGEST THAT CHRONIC STRESS CAN ELICIT HERITABLE CHANGES IN THE CHROMATIN LANDSCAPE THAT 'LOCK' CELLS IN ABNORMAL STATES, WHICH THEN LEAD TO DISEASE. WE EMPHASIZE THE NEED TO INVESTIGATE EPIGENETIC STATES IN DISEASE AND LINKS TO STRESS AND TO CONSIDER HOW THE KNOWLEDGE GAINED THROUGH THESE STUDIES MAY FOSTER NEW MEANS OF DISEASE PREVENTION AND MANAGEMENT. 2010