1 3143 162 GLOBAL MIRNA/PROTEOMIC ANALYSES IDENTIFY MIRNAS AT 14Q32 AND 3P21, WHICH CONTRIBUTE TO FEATURES OF CHRONIC IRON-EXPOSED FALLOPIAN TUBE EPITHELIAL CELLS. MALIGNANT TRANSFORMATION OF FALLOPIAN TUBE SECRETORY EPITHELIAL CELLS (FTSECS) IS A KEY CONTRIBUTING EVENT TO THE DEVELOPMENT OF HIGH-GRADE SEROUS OVARIAN CARCINOMA (HGSOC). OUR RECENT FINDINGS IMPLICATE ONCOGENIC TRANSFORMATIVE EVENTS IN CHRONIC IRON-EXPOSED FTSECS, INCLUDING INCREASED EXPRESSION OF ONCOGENIC MEDIATORS, INCREASED TELOMERASE TRANSCRIPTS, AND INCREASED GROWTH/MIGRATORY POTENTIAL. HEREIN, WE EXTEND THESE STUDIES BY IMPLEMENTING AN INTEGRATED TRANSCRIPTOMIC AND MASS SPECTROMETRY-BASED PROTEOMICS APPROACH TO IDENTIFY GLOBAL MIRNA AND PROTEIN ALTERATIONS, FOR WHICH WE ALSO INVESTIGATE A SUBSET OF THESE TARGETS TO IRON-INDUCED FUNCTIONAL ALTERATIONS. PROTEOMIC ANALYSIS IDENTIFIED > 4500 PROTEINS, OF WHICH 243 TARGETS WERE DIFFERENTIALLY EXPRESSED. SIXTY-FIVE DIFFERENTIALLY EXPRESSED MIRNAS WERE IDENTIFIED, OF WHICH 35 WERE ASSOCIATED WITH THE "TOP" PROTEOMIC MOLECULES (> FOURFOLD CHANGE) IDENTIFIED BY INGENUITY PATHWAY ANALYSIS. TWENTY OF THESE 35 MIRNAS ARE AT THE 14Q32 LOCUS (ENCODING A CLUSTER OF 54 MIRNAS) WITH POTENTIAL TO BE REGULATED BY DNA METHYLATION AND HISTONE DEACETYLATION. AT 14Q32, MIR-432-5P AND MIR-127-3P WERE ~ 100-FOLD DOWNREGULATED WHEREAS MIR-138-5P WAS 16-FOLD DOWNREGULATED AT 3P21 IN CHRONIC IRON-EXPOSED FTSECS. COMBINATORIAL TREATMENT WITH METHYLTRANSFERASE AND DEACETYLATION INHIBITORS REVERSED EXPRESSION OF THESE MIRNAS, SUGGESTING CHRONIC IRON EXPOSURE ALTERS MIRNA EXPRESSION VIA EPIGENETIC ALTERATIONS. IN ADDITION, PAX8, AN IMPORTANT TARGET IN HGSOC AND A POTENTIAL MIRNA TARGET (FROM IPA) WAS EPIGENETICALLY DEREGULATED IN IRON-EXPOSED FTSECS. HOWEVER, BOTH PAX8 AND ALDH1A2 (ANOTHER IPA-PREDICTED TARGET) WERE EXPERIMENTALLY IDENTIFIED TO BE INDEPENDENTLY REGULATED BY THESE MIRNAS ALTHOUGH TERT RNA WAS PARTIALLY REGULATED BY MIR-138-5P. INTERESTINGLY, OVEREXPRESSION OF MIR-432-5P DIMINISHED CELL NUMBERS INDUCED BY LONG-TERM IRON EXPOSURE IN FTSECS. COLLECTIVELY, OUR GLOBAL PROFILING APPROACHES UNCOVERED PATTERNS OF MIRNA AND PROTEOMIC ALTERATIONS THAT MAY BE REGULATED BY GENOME-WIDE EPIGENETIC ALTERATIONS AND CONTRIBUTE TO FUNCTIONAL ALTERATIONS INDUCED BY CHRONIC IRON EXPOSURE IN FTSECS. THIS STUDY MAY PROVIDE A PLATFORM TO IDENTIFY FUTURE BIOMARKERS FOR EARLY OVARIAN CANCER DETECTION AND NEW TARGETS FOR THERAPY. 2021 2 2916 28 GENE VARIANTS AS DETERMINANTS OF LONGEVITY: FOCUS ON THE INFLAMMATORY FACTORS. HUMAN LONGEVITY IS AN EXTREMELY COMPLEX TRAIT WITH VARIOUS GENETIC, EPIGENETIC AND ENVIRONMENTAL FACTORS ACTING UPON THE LONGEVITY PHENOTYPE. IT IS NOW BECOMING EVIDENT THAT WHILST THE GENETIC DIFFERENCES CONTRIBUTE ONLY MODESTLY TO LIFE EXPECTANCY BEFORE THE AGE OF 60 YEARS, THEIR IMPACT ON SURVIVAL BECOMES MORE PROMINENT AT THE EXTREME AGES. SEVERAL LONGEVITY GENE CANDIDATES HAVE EMERGED DURING THE PAST DECADE; THE MAJORITY OF THEM ARE RELATED EITHER TO INFLAMMATORY FUNCTIONS, STRESS RESPONSE OR TO LIPID AND GLUCOSE METABOLISM. THE VARIANTS OF INFLAMMATORY AND IMMUNE RESPONSE GENES ARE OF SPECIAL INTEREST SINCE ADVANCING AGES IS ACCOMPANIED BY A DECLINE IN SEVERAL IMMUNE FUNCTIONS--A PHENOMENON CALLED IMMUNOSENESCENCE. PARADOXICALLY, AGEING IS ALSO CHARACTERISED BY CHRONIC LOW-GRADE INFLAMMATION TERMED "INFLAMMAGING", WHICH MANIFESTS AS A TWO- TO FOURFOLD INCREASE IN THE PRODUCTION OF PROINFLAMMATORY CYTOKINES AND ACUTE PHASE PROTEINS. THESE CONTRASTING PHENOMENA PROVIDE A FUNCTIONAL RATIONALE OF HOW THE GENETIC DIFFERENCES IN INFLAMMATORY MEDIATORS MAY MODIFY THE LIFE SPAN OF THE ELDERLY. BESIDES DESCRIBING THE PRE-EXISTING INFLAMMATORY AND IMMUNE-RELATED LONGEVITY GENE VARIANTS, IN THIS REVIEW, WE ALSO EXPLAIN SOME OF THE THEORETICAL AND PRACTICAL CHALLENGES THAT GENETIC LONGEVITY STUDIES OFTEN ENCOUNTER. 2010 3 3605 41 IMPROVING PARP INHIBITOR EFFICACY IN HIGH-GRADE SEROUS OVARIAN CARCINOMA: A FOCUS ON THE IMMUNE SYSTEM. HIGH-GRADE SEROUS OVARIAN CARCINOMA (HGSOC) IS A GENOMICALLY UNSTABLE MALIGNANCY RESPONSIBLE FOR OVER 70% OF ALL DEATHS DUE TO OVARIAN CANCER. WITH ROUGHLY 50% OF ALL HGSOC HARBORING DEFECTS IN THE HOMOLOGOUS RECOMBINATION (HR) DNA REPAIR PATHWAY (E.G., BRCA1/2 MUTATIONS), THE INTRODUCTION OF POLY ADP-RIBOSE POLYMERASE INHIBITORS (PARPI) HAS DRAMATICALLY IMPROVED OUTCOMES FOR WOMEN WITH HR DEFECTIVE HGSOC. BY BLOCKING THE REPAIR OF SINGLE-STRANDED DNA DAMAGE IN CANCER CELLS ALREADY LACKING HIGH-FIDELITY HR PATHWAYS, PARPI CAUSES THE ACCUMULATION OF DOUBLE-STRANDED DNA BREAKS, LEADING TO CELL DEATH. THUS, THIS SYNTHETIC LETHALITY RESULTS IN PARPI SELECTIVELY TARGETING CANCER CELLS, RESULTING IN IMPRESSIVE EFFICACY. DESPITE THIS, RESISTANCE TO PARPI COMMONLY DEVELOPS THROUGH DIVERSE MECHANISMS, SUCH AS THE ACQUISITION OF SECONDARY BRCA1/2 MUTATIONS. PERHAPS LESS WELL DOCUMENTED IS THAT PARPI CAN IMPACT BOTH THE TUMOUR MICROENVIRONMENT AND THE IMMUNE RESPONSE, THROUGH UPREGULATION OF THE STIMULATOR OF INTERFERON GENES (STING) PATHWAY, UPREGULATION OF IMMUNE CHECKPOINTS SUCH AS PD-L1, AND BY STIMULATING THE PRODUCTION OF PRO-INFLAMMATORY CYTOKINES. WHILST TARGETED IMMUNOTHERAPIES HAVE NOT YET FOUND THEIR PLACE IN THE CLINIC FOR HGSOC, THE EVIDENCE ABOVE, AS WELL AS ONGOING STUDIES EXPLORING THE SYNERGISTIC EFFECTS OF PARPI WITH IMMUNE AGENTS, INCLUDING IMMUNE CHECKPOINT INHIBITORS, SUGGESTS POTENTIAL FOR TARGETING THE IMMUNE RESPONSE IN HGSOC. ADDITIONALLY, COMBINING PARPI WITH EPIGENETIC-MODULATING DRUGS MAY IMPROVE PARPI EFFICACY, BY INDUCING A BRCA-DEFECTIVE PHENOTYPE TO SENSITISE RESISTANT CANCER CELLS TO PARPI. FINALLY, INVIGORATING AN IMMUNE RESPONSE DURING PARPI THERAPY MAY ENGAGE ANTI-CANCER IMMUNE RESPONSES THAT POTENTIATE EFFICACY AND MITIGATE THE DEVELOPMENT OF PARPI RESISTANCE. HERE, WE WILL REVIEW THE EMERGING PARPI LITERATURE WITH A FOCUS ON PARPI EFFECTS ON THE IMMUNE RESPONSE IN HGSOC, AS WELL AS THE POTENTIAL OF EPIGENETIC COMBINATION THERAPIES. WE HIGHLIGHT THE POTENTIAL OF TRANSFORMING HGSOC FROM A LETHAL TO A CHRONIC DISEASE AND INCREASING THE LIKELIHOOD OF CURE. 2022 4 4567 42 MYELOID-DERIVED SUPPRESSOR CELL FUNCTION AND EPIGENETIC EXPRESSION EVOLVES OVER TIME AFTER SURGICAL SEPSIS. BACKGROUND: SEPSIS IS AN INCREASINGLY SIGNIFICANT CHALLENGE THROUGHOUT THE WORLD AS ONE OF THE MAJOR CAUSES OF PATIENT MORBIDITY AND MORTALITY. CENTRAL TO THE HOST IMMUNOLOGIC RESPONSE TO SEPSIS IS THE INCREASE IN CIRCULATING MYELOID-DERIVED SUPPRESSOR CELLS (MDSCS), WHICH HAVE BEEN DEMONSTRATED TO BE PRESENT AND INDEPENDENTLY ASSOCIATED WITH POOR LONG-TERM CLINICAL OUTCOMES. MDSCS ARE PLASTIC CELLS AND POTENTIALLY MODIFIABLE, PARTICULARLY THROUGH EPIGENETIC INTERVENTIONS. THE OBJECTIVE OF THIS STUDY WAS TO DETERMINE HOW THE SUPPRESSIVE PHENOTYPE OF MDSCS EVOLVES AFTER SEPSIS IN SURGICAL ICU PATIENTS, AS WELL AS TO IDENTIFY EPIGENETIC DIFFERENCES IN MDSCS THAT MAY EXPLAIN THESE CHANGES. METHODS: CIRCULATING MDSCS FROM 267 SURVIVORS OF SURGICAL SEPSIS WERE PHENOTYPED AT VARIOUS INTERVALS OVER 6 WEEKS, AND HIGHLY ENRICHED MDSCS FROM 23 OF THESE SAMPLES WERE CO-CULTURED WITH CD3/CD28-STIMULATED AUTOLOGOUS T CELLS. MICRORNA EXPRESSION FROM ENRICHED MDSCS WAS ALSO IDENTIFIED. RESULTS: WE OBSERVED THAT MDSC NUMBERS REMAIN SIGNIFICANTLY ELEVATED IN HOSPITALIZED SEPSIS SURVIVORS FOR AT LEAST 6 WEEKS AFTER THEIR INFECTION. HOWEVER, ONLY MDSCS OBTAINED AT AND BEYOND 14 DAYS POST-SEPSIS SIGNIFICANTLY SUPPRESSED T LYMPHOCYTE PROLIFERATION AND IL-2 PRODUCTION. THESE SAME MDSCS DISPLAYED UNIQUE EPIGENETIC (MIRNA) EXPRESSION PATTERNS COMPARED TO EARLIER TIME POINTS. CONCLUSIONS: WE CONCLUDE THAT IN SEPSIS SURVIVORS, IMMATURE MYELOID CELL NUMBERS ARE INCREASED BUT THE IMMUNE SUPPRESSIVE FUNCTION SPECIFIC TO MDSCS DEVELOPS OVER TIME, AND THIS IS ASSOCIATED WITH A SPECIFIC EPIGENOME. THESE FINDINGS MAY EXPLAIN THE CHRONIC AND PERSISTENT IMMUNE SUPPRESSION SEEN IN THESE SUBJECTS. 2019 5 4354 36 MIR-21-5P DIRECTLY CONTRIBUTES TO REGULATING ENOS EXPRESSION IN HUMAN ARTERY ENDOTHELIAL CELLS UNDER NORMOXIA AND HYPOXIA. CLINICAL CONDITIONS ASSOCIATED WITH HYPOXIA AND OXIDATIVE STRESS, SUCH AS FETAL GROWTH RESTRICTION (FGR), RESULTS IN ENDOTHELIAL DYSFUNCTION. PREVIOUS REPORTS SHOW THAT CHANGES IN ENOS EXPRESSION UNDER THESE CONDITIONS ARE TIGHTLY CONTROLLED BY DNA METHYLATION AND HISTONE POSTTRANSLATIONAL MODIFICATIONS. HOWEVER, THE CONTRIBUTION OF AN ORCHESTRATING EPIGENETIC MECHANISM, SUCH AS MIRNAS, ON THE NO-RELATED GENES EXPRESSION HAS NOT BEEN ADDRESSED. WE AIMED TO DETERMINE THE LEVELS OF MIRNAS HIGHLY EXPRESSED IN NORMAL ENDOTHELIAL CELLS (EC), MIR-21 AND MIR-126, IN FGR HUMAN UMBILICAL ARTERY EC (HUAEC), AND THEIR EFFECTS ON HYPOXIA-DEPENDENT REGULATION OF BOTH, NO-RELATED AND OXIDATIVE STRESS-RELATED GENES. RESULTS WERE VALIDATED BY TRANSCRIPTOME ANALYSIS OF HUAEC CULTURED UNDER CHRONIC LOW OXYGEN CONDITIONS. CULTURED FGR-HUAEC SHOWED DECREASED HSA-MIR-21, DDAH1, SOD1, AND NRF2, BUT INCREASED MIR-126, NOX4, AND ENOS LEVELS, COMPARED WITH CONTROLS. MIR-21-5P LEVELS IN FGR WERE ASSOCIATED WITH INCREASED HG-MIR-21 GENE PROMOTER METHYLATION, WITH NO CHANGES IN HG-MIR-126 GENE PROMOTER METHYLATION. HUAEC EXPOSED TO HYPOXIA SHOWED A TRANSIENT INCREASE IN ENOS AND DDAH11, PARALLELED BY DECREASE MIR-21-5P LEVELS, BUT NO CHANGES IN MIR-126-3P AND THE OTHER GENES UNDER STUDY. TRANSCRIPTOME PROFILING SHOWED AN INVERSE RELATIONSHIP AMONG MIR-21 AND SEVERAL TRANSCRIPTS TARGETED BY MIR-21 IN HUAEC EXPOSED TO HYPOXIA, MEANWHILE MIR-21-5P-MIMIC DECREASED ENOS AND DDAH1 TRANSCRIPTS STABILITY, BLOCKING THEIR INDUCTION BY HYPOXIA. CONSEQUENTLY, FGR PROGRAMS A HYPOXIA-RELATED MIRNA THAT CONTRIBUTES TO THE REGULATION OF THE NO PATHWAY, INVOLVING A DIRECT EFFECT OF MIR-21-5P ON ENOS TRANSCRIPT STABILITY, NOT PREVIOUSLY REPORTED. MOREOVER, HYPOXIA DOWNREGULATES MIR-21-5P, CONTRIBUTING TO INCREASING THE EXPRESSION OF NO-RELATED GENES IN ARTERIAL ENDOTHELIAL CELLS. 2020 6 3940 36 LNCRNA DLEU2 REGULATES SIRTUINS AND MITOCHONDRIAL RESPIRATORY CHAIN COMPLEX IV: A NOVEL PATHWAY IN OBESITY AND OFFSPRING'S HEALTH. BACKGROUND: LONG NON-CODING RNAS (LNCRNAS) HAVE EMERGED AS A RAPIDLY EXPANDING AREA OF INTEREST IN CHRONIC DISEASES. THEY ARE MOSTLY UNKNOWN FOR ROLES IN METABOLIC REGULATION. SIRTUINS, AN EPIGENETIC MODULATOR CLASS, REGULATE METABOLIC PATHWAYS. HOWEVER, HOW SIRTUINS ARE REGULATED VIA LNCRNA IS UNKNOWN. WE HYPOTHESIZED THAT A HIGH-FAT HIGH-FRUCTOSE DIET (HFD-HF) DURING PREGNANCY WOULD INCREASE THE RISK FOR OBESITY VIA LNCRNA-SIRTUIN PATHWAYS. METHODS: FEMALE C57BL/6 MICE (F0) WERE FED EITHER CHOW DIET (CD) OR HFD-HF FOR 6 WEEKS TILL BIRTH. THE PUPS (F1) WERE FED EITHER CD OR HFD-HF FOR 20 WEEKS. EXPRESSION OF DLEU2, SIRTUINS, MITOCHONDRIAL RESPIRATORY COMPLEXES, AND OXIDATIVE STRESS WERE INVESTIGATED IN THE F1 LIVERS. FASTING BLOOD GLUCOSE, INSULIN SENSITIVITY, GLUCOSE TOLERANCE, BODY AND TISSUES WEIGHT WERE MEASURED. A MECHANISTIC INTERACTION WAS THEN CARRIED OUT USING A DLEU2 KNOCKDOWN EXPERIMENT IN THE HEPG2 CELL. RESULTS: DLEU2 AND SIRTUINS WERE BOTH SIGNIFICANTLY DECREASED IN THE LIVERS OF HFD-HF FED MALE F1 WHOSE MOTHERS WERE EITHER FED CD OR HFD-HF DURING REPRODUCTIVE AND PREGNANCY WINDOWS. CONFIRMING THIS CONNECTION, UPON SILENCING DLEU2, TRANSCRIPTION LEVELS OF SIRT1 THROUGH 6 AND TRANSLATIONAL LEVELS OF SIRT1, 3, 5, AND 6 WERE SIGNIFICANTLY DOWNREGULATED. KNOCKDOWN OF DLEU2 SIGNIFICANTLY DECREASED THE PROTEIN LEVEL OF CYTOCHROME-C OXIDASE (COMPLEX IV, MTCO1) WITHOUT ALTERING OTHER MITOCHONDRIAL COMPLEXES, DECREASED MITOCHONDRIAL MEMBRANE POTENTIAL, DECREASED ATP, AND INCREASED REACTIVE OXYGEN SPECIES. INTERESTINGLY, IN F1 LIVERS, THE PROTEIN LEVEL OF MTCO1 WAS ALSO SIGNIFICANTLY DECREASED UNDER AN HFD-HF DIET OR EVEN UNDER CHOW DIET IF THE MOTHER WAS EXPOSED TO HFD-HF. CONCLUSION: OUR FINDINGS REVEAL FOR THE FIRST TIME THAT ONE LNCRNA CAN REGULATE SIRTUINS AND A SPECIFIC MITOCHONDRIAL COMPLEX. FURTHERMORE, DIET OR MATERNAL DIET CAN MODULATE DLEU2 AND ITS DOWNSTREAM REGULATORS IN OFFSPRING, SUGGESTING A POTENTIAL ROLE OF DLEU2 IN METABOLIC DISORDERS OVER ONE OR MORE GENERATIONS. 2022 7 4303 38 MICRORNA-223 INHIBITS TISSUE FACTOR EXPRESSION IN VASCULAR ENDOTHELIAL CELLS. OBJECTIVE: ATHEROSCLEROSIS IS A CHRONIC INFLAMMATORY PROCESS, IN WHICH VASCULAR ENDOTHELIAL CELLS (ECS) BECOME DYSFUNCTIONAL OWING TO THE EFFECTS OF CHEMICAL SUBSTANCES, SUCH AS INFLAMMATORY FACTOR AND GROWTH FACTORS. TISSUE FACTOR (TF) EXPRESSION IS INDUCED BY THE ABOVE CHEMICAL SUBSTANCES IN ACTIVATED ECS. TF INITIATES THROMBOSIS ON DISRUPTED ATHEROSCLEROTIC PLAQUES WHICH PLAYS AN ESSENTIAL ROLE DURING THE ONSET OF ACUTE CORONARY SYNDROMES (ACS). INCREASING EVIDENCES SUGGEST THE IMPORTANT ROLE OF MICRORNAS AS EPIGENETIC REGULATORS OF ATHEROSCLEROTIC DISEASE. THE AIM OF OUR STUDY IS TO IDENTIFY IF MICRORNA-223 (MIR-223) TARGETS TF IN ECS. METHODS AND RESULTS: BIOINFORMATIC ANALYSIS SHOWED THAT TF IS A TARGET CANDIDATE OF MIR-223. WESTERN BLOTTING ANALYSIS REVEALED THAT TUMOR NECROSIS FACTOR ALPHA (TNF-ALPHA) INCREASED TF EXPRESSION IN AORTA OF C57BL/6J MICE AND CULTURED ECS (EA.HY926 CELLS AND HUVEC) AFTER 4 H TREATMENT. IN TNF-ALPHA TREATED ECS, TF MRNA WAS ALSO INCREASED MEASURED BY REAL-TIME PCR. REAL-TIME PCR RESULTS SHOWED THAT MIR-223 LEVELS WERE DOWNREGULATED IN TNF-ALPHA-TREATED AORTA OF C57BL/6J MICE AND CULTURED ECS. TRANSFECTION OF ECS WITH MIR-223 MIMIC OR MIR-223 INHIBITOR MODIFIED TF EXPRESSION BOTH IN MRNA AND PROTEIN LEVELS. LUCIFERASE ASSAYS CONFIRMED THAT MIR-223 SUPPRESSED TF EXPRESSION BY BINDING TO THE SEQUENCE OF TF 3'-UNTRANSLATED REGIONS (3'UTR). TF PROCOAGULANT ACTIVITY WAS INHIBITED BY OVEREXPRESSING MIR-223 WITH OR WITHOUT TNF-ALPHA STIMULATION. CONCLUSIONS: MIR-223-MEDIATED SUPPRESSION OF TF EXPRESSION PROVIDES A NOVEL MOLECULAR MECHANISM FOR THE REGULATION OF COAGULATION CASCADE, AND SUGGESTS A CLUE AGAINST THROMBOGENESIS DURING THE PROCESS OF ATHEROSCLEROTIC PLAQUE RUPTURE. 2014 8 3164 36 GREEN TEA PREVENTS NAFLD BY MODULATION OF MIR-34A AND MIR-194 EXPRESSION IN A HIGH-FAT DIET MOUSE MODEL. BACKGROUND/AIMS: NONALCOHOLIC FATTY LIVER DISEASE (NAFLD) IS CONSIDERED THE HEPATIC MANIFESTATION OF METABOLIC SYNDROME. IT IS CURRENTLY THE MOST COMMON CHRONIC LIVER DISEASE WITH COMPLEX PATHOGENESIS AND CHALLENGING TREATMENT. HERE, WE INVESTIGATED THE HEPATOPROTECTIVE ROLE OF GREEN TEA (GT) AND DETERMINED THE INVOLVEMENT OF MIRNAS AND ITS MECHANISM OF ACTION. METHODS: MALE C57BL/6 MICE WERE FED WITH A HIGH-FAT DIET FOR 4 WEEKS. AFTER THIS PERIOD, THE ANIMALS RECEIVED GAVAGE WITH GT (500 MG/KG BODY WEIGHT) OVER 12 WEEKS (5 DAYS/WEEK). HEPG2 CELL LINES WERE TRANSFECTED WITH MIR-34A OR MIR-194 MIMETICS AND INHIBITORS TO VALIDATE THE IN VIVO RESULTS OR WERE TREATED WITH TNF-ALPHA TO EVALUATE MIRNA REGULATION. RESULTS: GT SUPPLEMENTATION PROTECTS AGAINST NAFLD DEVELOPMENT BY ALTERING LIPID METABOLISM, INCREASING GENE EXPRESSION INVOLVED IN TRIGLYCERIDES AND FATTY ACID CATABOLISM, AND DECREASING UPTAKE AND LIPID ACCUMULATION. THIS PHENOTYPE WAS ACCOMPANIED BY MIR-34A DOWNREGULATION AND AN INCREASE IN THEIR MRNA TARGETS SIRT1, PPARALPHA, AND INSIG2. GT UPREGULATED HEPATIC MIR-194 BY INHIBITING TNF-ALPHA ACTION LEADING TO A DECREASE IN MIR-194 TARGET GENES HMGCS/APOA5. CONCLUSION: OUR STUDY IDENTIFIED FOR THE FIRST TIME THAT THE BENEFICIAL EFFECTS OF GT IN THE LIVER CAN BE DUE TO THE MODULATION OF MIRNAS, OPENING NEW PERSPECTIVES FOR THE TREATMENT OF NAFLD FOCUSING ON EPIGENETIC REGULATION OF MIR-34A AND MIR-194 AS GREEN TEA TARGETS. 2019 9 3624 38 IN VIVO FUNCTION OF FLOW-RESPONSIVE CIS-DNA ELEMENTS OF ENOS GENE: A ROLE FOR CHROMATIN-BASED MECHANISMS. BACKGROUND: ENOS (ENDOTHELIAL NITRIC OXIDE SYNTHASE) IS AN ENDOTHELIAL CELL (EC)-SPECIFIC GENE PREDOMINANTLY EXPRESSED IN MEDIUM- TO LARGE-SIZED ARTERIES WHERE ECS EXPERIENCE ATHEROPROTECTIVE LAMINAR FLOW WITH HIGH SHEAR STRESS. DISTURBED FLOW WITH LOWER AVERAGE SHEAR STRESS DECREASES ENOS TRANSCRIPTION, WHICH LEADS TO THE DEVELOPMENT OF ATHEROSCLEROSIS, ESPECIALLY AT BIFURCATIONS AND CURVATURES OF ARTERIES. THIS PROTOTYPIC ARTERIAL EC GENE CONTAINS 2 DISTINCT FLOW-RESPONSIVE CIS-DNA ELEMENTS IN THE PROMOTER, THE SHEAR STRESS RESPONSE ELEMENT (SSRE) AND THE KLF (KRUPPEL-LIKE FACTOR) ELEMENT. PREVIOUS IN VITRO STUDIES SUGGESTED THEIR POSITIVE REGULATORY FUNCTIONS ON FLOW-INDUCED TRANSCRIPTION OF EC GENES INCLUDING ENOS. HOWEVER, THE IN VIVO FUNCTION OF THESE CIS-DNA ELEMENTS REMAINS UNKNOWN. METHODS: INSERTIONAL TRANSGENIC MICE WITH A MUTATION AT EACH FLOW-RESPONSIVE CIS-DNA ELEMENT WERE GENERATED USING A MURINE ENOS PROMOTER-BETA-GALACTOSIDASE REPORTER BY LINKER-SCANNING MUTAGENESIS AND COMPARED WITH EPISOMAL-BASED MUTATIONS IN VITRO. DNA METHYLATION AT THE ENOS PROXIMAL PROMOTER IN MOUSE ECS WAS ASSESSED BY BISULFITE SEQUENCING OR PYROSEQUENCING. RESULTS: WILD TYPE MICE WITH A FUNCTIONAL ENOS PROMOTER-REPORTER TRANSGENE EXHIBITED REDUCED ENDOTHELIAL REPORTER EXPRESSION IN THE ATHEROPRONE REGIONS OF DISTURBED FLOW (N=5). IT IS SURPRISING THAT THE SSRE MUTATION ABROGATED REPORTER EXPRESSION IN ECS AND WAS ASSOCIATED WITH ABERRANT HYPERMETHYLATION AT THE ENOS PROXIMAL PROMOTER (N=7). REPORTER GENE SILENCING WAS INDEPENDENT OF TRANSGENE COPY NUMBER AND INTEGRATION POSITION, INDICATING THAT THE SSRE IS A CRITICAL CIS-ELEMENT NECESSARY FOR ENOS TRANSCRIPTION IN VIVO. THE KLF MUTATION DEMONSTRATED AN INTEGRATION SITE-SPECIFIC DECREASE IN ENOS TRANSCRIPTION, AGAIN WITH MARKED PROMOTER METHYLATION (N=8), SUGGESTING THAT THE SSRE ALONE IS NOT SUFFICIENT FOR ENOS TRANSCRIPTION IN VIVO. IN WILD TYPE MICE, THE NATIVE ENOS PROMOTER WAS SIGNIFICANTLY HYPERMETHYLATED IN ECS FROM THE ATHEROPRONE REGIONS WHERE ENOS EXPRESSION WAS MARKEDLY REPRESSED BY CHRONIC DISTURBED FLOW, DEMONSTRATING THAT ENOS EXPRESSION IS REGULATED BY FLOW-DEPENDENT DNA METHYLATION THAT IS REGION-SPECIFIC IN THE ARTERIAL ENDOTHELIUM IN VIVO. CONCLUSIONS: WE REPORT, FOR THE FIRST TIME, THAT THE SSRE AND KLF ELEMENTS ARE CRITICAL FLOW SENSORS NECESSARY FOR A TRANSCRIPTIONALLY PERMISSIVE, HYPOMETHYLATED ENOS PROMOTER IN ECS UNDER CHRONIC SHEAR STRESS IN VIVO. MOREOVER, ENOS EXPRESSION IS REGULATED BY FLOW-DEPENDENT EPIGENETIC MECHANISMS, WHICH OFFERS NOVEL MECHANISTIC INSIGHT ON ENOS GENE REGULATION IN ATHEROGENESIS. 2021 10 4293 44 MICRORNA PROFILING IN MUC2 KNOCKOUT MICE OF COLITIS-ASSOCIATED CANCER MODEL REVEALS EPIGENETIC ALTERATIONS DURING CHRONIC COLITIS MALIGNANT TRANSFORMATION. OUR PREVIOUS STUDIES HAVE DEMONSTRATED THAT GENETIC DELETION OF THE MUC2 GENE CAUSES COLORECTAL CANCERS IN MICE. THE CURRENT STUDY FURTHER SHOWED THAT AT THE EARLY STAGE (<3 MONTHS) THE MUC2 KNOCKOUT MICE SPONTANEOUSLY DEVELOPED CHRONIC INFLAMMATION IN COLON AND RECTUM, SIMILAR PATHOLOGICAL FEATURES AS HUMAN COLITIS; AND AT THE LATE STAGE (>3 MONTHS) THE MICE EXHIBITED COLORECTAL CANCER, INCLUDING A UNIQUE PHENOTYPE OF RECTAL PROLAPSED (RECTAL SEVERE INFLAMMATION AND ADENOCARCINOMA). THUS, THE AGE OF 3 MONTHS MIGHT BE THE KEY POINT OF THE TRANSITION FROM CHRONIC INFLAMMATION TO CANCER. TO DETERMINE THE MECHANISMS OF THE MALIGNANT TRANSFORMATION, WE CONDUCTED MIRNA ARRAY ON THE COLONIC EPITHELIAL CELLS FROM THE 3-MONTH MUC2-/- AND +/+ MICE. MICRORNA PROFILING SHOWED DIFFERENTIAL EXPRESSION OF MIRNAS (I.E. LOWER OR HIGHER EXPRESSION ENRICHMENTS) IN MUC2-/- MICE. 15 OF THEM WERE VALIDATED BY QUANTITATIVE PCR. BASED ON RELEVANCE TO CYTOKINE AND CANCER, 4 MIRNAS (MIR-138, MIR-145, MIR-146A, AND MIR-150) WERE VALIDATE AND WERE FOUND SIGNIFICANTLY DOWNREGULATED IN HUMAN COLITIS AND COLORECTAL CANCER TISSUES. THE NETWORK OF THE TARGETS OF THESE MIRNAS WAS CHARACTERIZED, AND INTERESTEDLY, MIRNA-ASSOCIATED CYTOKINES WERE SIGNIFICANTLY INCREASED IN MUC2-/-MICE. THIS IS THE FIRST TO REVEAL THE IMPORTANCE OF ABERRANT EXPRESSION OF MIRNAS IN DYNAMICALLY TRANSFORMATION FROM CHRONIC COLITIS TO COLITIS-ASSOCIATED CANCER. THESE FINDINGS SHED LIGHT ON REVEALING THE MECHANISMS OF CHRONIC COLITIS MALIGNANT TRANSFORMATION. 2014 11 4332 40 MICRORNAS: IMPORTANT MODULATORS OF OXLDL-MEDIATED SIGNALING IN ATHEROSCLEROSIS. OXIDIZED LOW-DENSITY LIPOPROTEIN (OXLDL) IS KNOWN TO BE A MAJOR RISK FACTOR FOR THE INITIATION AND DEVELOPMENT OF ATHEROSCLEROSIS. IT CAN ELICIT AN ARRAY OF ATHEROGENIC RESPONSES IN MULTIPLE TYPES OF CELLS RESIDING IN THE ARTERIAL WALL, SUCH AS ENDOTHELIAL CELLS (ECS), MACROPHAGES, DENDRITIC CELLS (DCS), AND VASCULAR SMOOTH MUSCLE CELLS (VSMCS). ALTHOUGH THEY HAVE BEEN STUDIED FOR MANY YEARS, THE DETAILED MECHANISMS MODULATING OXLDL-INDUCED INFLAMMATION HAVE NOT BEEN FULLY ELUCIDATED. EPIGENETIC MECHANISMS CONSIST OF DNA METHYLATION, HISTONE POST-TRANSLATIONAL MODIFICATIONS (PTMS), AND MICRORNA (MIRNA) ALTERATIONS. RECENTLY, EPIGENETIC FACTORS, ESPECIALLY MIRNAS, HAVE EMERGED AS NOVEL COMPONENTS OF THE GENE EXPRESSION REGULATING OXLDL-TRIGGERED SIGNAL TRANSDUCTION. IN ADDITION TO THEIR REGULATORY ROLES IN SIGNALING MOLECULES, INCREASING EVIDENCE SUGGESTS THAT THE DIFFERENT GENETIC STABILITY AND CROSS-TALK REGULATION AMONG THESE EPIGENETIC FACTORS MAY BE PARTICULARLY IMPORTANT TO THE SUSTAINED INFLAMMATION INITIATED BY TEMPORAL OXLDL STIMULATION. THEREFORE, IN THIS REVIEW, WE PRIMARILY FOCUSED ON THE FUNCTIONAL ROLE OF MIRNAS, AS WELL AS OTHER EPIGENETIC FACTORS, ON MODULATING OXLDL-INDUCED SIGNAL TRANSDUCTION IN DIFFERENT VASCULAR CELLS, WITH A SPECIAL EMPHASIS ON THE CROSSTALK INTERACTIONS BETWEEN MIRNAS AND OTHER EPIGENETIC PLAYERS THAT HELP TRANSLATE TRANSIENT ENVIRONMENT INSULTS INTO CHRONIC INFLAMMATION. MOREOVER, WE EXTENSIVELY DISCUSSED THE POTENTIAL APPLICABILITY OF MIRNAS AS DISEASE BIOMARKERS AND THERAPEUTIC TARGETS IN DIAGNOSING AND TREATING ATHEROSCLEROSIS. 2013 12 1666 48 DOWNREGULATION OF MICRORNA-145A-5P PROMOTES STEATOSIS-TO-NASH PROGRESSION THROUGH UPREGULATION OF NR4A2. BACKGROUND & AIMS: THE MOLECULAR MECHANISMS UNDERLYING THE PROGRESSION OF SIMPLE STEATOSIS TO NON-ALCOHOLIC STEATOHEPATITIS (NASH) REMAIN INCOMPLETELY UNDERSTOOD, THOUGH THE POTENTIAL ROLE OF EPIGENETIC REGULATION BY MICRORNA (MIRNAS) IS AN AREA OF INCREASING INTEREST. IN THE PRESENT STUDY, WE AIMED TO INVESTIGATE THE ROLE AND MECHANISM OF MIRNAS DURING STEATOSIS-TO-NASH PROGRESSION. METHODS: MIR-145A-5P WAS IDENTIFIED AS AN IMPORTANT CHECKPOINT IN STEATOSIS-TO-NASH PROGRESSION. IN VIVO LOSS-OF-FUNCTION AND GAIN-OF-FUNCTION STUDIES WERE PERFORMED TO EXPLORE THE ROLE OF MIR-145A-5P AND NR4A2 IN NASH PROGRESSION. RNA-SEQUENCING AND BIOINFORMATIC ANALYSIS WERE USED TO INVESTIGATE THE TARGETS OF MIR-145A-5P. RESULTS: SUPPRESSION OF MIR-145A-5P IN THE LIVER AGGRAVATED LIPID ACCUMULATION AND ACTIVATED HEPATIC INFLAMMATION, LIVER INJURY AND FIBROSIS IN STEATOTIC MICE, WHEREAS ITS RESTORATION MARKEDLY ATTENUATED DIET-INDUCED NASH PATHOGENESIS. MECHANISTICALLY, MIR-145A-5P WAS ABLE TO DOWNREGULATE THE NUCLEAR RECEPTOR NR4A2 AND THUS INHIBIT THE EXPRESSION OF NASH-ASSOCIATED GENES. SIMILARLY, NR4A2 OVEREXPRESSION PROMOTED STEATOSIS-TO-NASH PROGRESSION WHILE LIVER-SPECIFIC NR4A2 KNOCKOUT MICE WERE PROTECTED FROM DIET-INDUCED NASH. THIS ROLE OF THE MIR-145A-5P/NR4A2 REGULATORY AXIS WAS ALSO CONFIRMED IN PRIMARY HUMAN HEPATOCYTES. FURTHERMORE, THE EXPRESSION OF MIR-145A-5P WAS REDUCED AND THE EXPRESSION OF NR4A2 WAS INCREASED IN THE LIVERS OF PATIENTS WITH NASH, WHILE THEIR EXPRESSION LEVELS SIGNIFICANTLY NEGATIVELY AND POSITIVELY CORRELATED WITH FEATURES OF LIVER PATHOLOGY, RESPECTIVELY. CONCLUSIONS: OUR FINDINGS HIGHLIGHT THE ROLE OF THE MIR-145A-5P/NR4A2 REGULATORY AXIS IN STEATOSIS-TO-NASH PROGRESSION, SUGGESTING THAT EITHER SUPPLEMENTATION OF MIR-145A-5P OR PHARMACOLOGICAL INHIBITION OF NR4A2 IN HEPATOCYTES MAY PROVIDE A PROMISING THERAPEUTIC APPROACH FOR THE TREATMENT OF NASH. IMPACT AND IMPLICATIONS: NON-ALCOHOLIC FATTY LIVER DISEASE (NAFLD) IS A DYNAMIC SPECTRUM OF CHRONIC LIVER DISEASES RANGING FROM SIMPLE STEATOSIS TO NON-ALCOHOLIC STEATOHEPATITIS (NASH). UNFORTUNATELY, THERE ARE CURRENTLY NO APPROVED DRUGS FOR NASH. OUR CURRENT STUDY IDENTIFIED MIR-145A-5P AS A NOVEL REGULATOR THAT INHIBITS STEATOSIS-TO-NASH PROGRESSION. WE FOUND THAT MIR-145A-5P WAS ABLE TO DOWNREGULATE THE NUCLEAR RECEPTOR NR4A2 TO SUPPRESS THE EXPRESSION OF NASH-ASSOCIATED GENES. THE DIFFERENTIAL EXPRESSION OF MIR-145A-5P AND NR4A2 WAS FURTHER CONFIRMED IN PATIENTS WITH NASH, RAISING THE POSSIBILITY THAT SUPPLEMENTATION OF MIR-145A-5P OR SUPPRESSION OF NR4A2 IN HEPATOCYTES MIGHT PROVIDE NOVEL STRATEGIES FOR TREATING NASH. 2023 13 351 39 ALTERED ENDOTHELIAL DYSFUNCTION-RELATED MIRS IN PLASMA FROM ME/CFS PATIENTS. MYALGIC ENCEPHALOMYELITIS/CHRONIC FATIGUE SYNDROME (ME/CFS) IS A COMPLEX DISEASE CHARACTERIZED BY UNEXPLAINED DEBILITATING FATIGUE. ALTHOUGH THE ETIOLOGY IS UNKNOWN, EVIDENCE SUPPORTS IMMUNOLOGICAL ABNORMALITIES, SUCH AS PERSISTENT INFLAMMATION AND IMMUNE-CELL ACTIVATION, IN A SUBSET OF PATIENTS. SINCE THE INTERPLAY BETWEEN INFLAMMATION AND VASCULAR ALTERATIONS IS WELL-ESTABLISHED IN OTHER DISEASES, ENDOTHELIAL DYSFUNCTION HAS EMERGED AS ANOTHER PLAYER IN ME/CFS PATHOGENESIS. ENDOTHELIAL NITRIC OXIDE SYNTHASE (ENOS) GENERATES NITRIC OXIDE (NO) THAT MAINTAINS ENDOTHELIAL HOMEOSTASIS. ENOS IS ACTIVATED BY SILENT INFORMATION REGULATOR 1 (SIRT1), AN ANTI-INFLAMMATORY PROTEIN. DESPITE ITS RELEVANCE, NO STUDY HAS ADDRESSED THE SIRT1/ENOS AXIS IN ME/CFS. THE INTEREST IN CIRCULATING MICRORNAS (MIRS) AS POTENTIAL BIOMARKERS IN ME/CFS HAS INCREASED IN RECENT YEARS. ACCORDINGLY, WE ANALYZE A SET OF MIRS REPORTED TO MODULATE THE SIRT1/ENOS AXIS USING PLASMA FROM ME/CFS PATIENTS. OUR RESULTS SHOW THAT MIR-21, MIR-34A, MIR-92A, MIR-126, AND MIR-200C ARE JOINTLY INCREASED IN ME/CFS PATIENTS COMPARED TO HEALTHY CONTROLS. A SIMILAR FINDING WAS OBTAINED WHEN ANALYZING PUBLIC MIR DATA ON PERIPHERAL BLOOD MONONUCLEAR CELLS. BIOINFORMATICS ANALYSIS SHOWS THAT ENDOTHELIAL FUNCTION-RELATED SIGNALING PATHWAYS ARE ASSOCIATED WITH THESE MIRS, INCLUDING OXIDATIVE STRESS AND OXYGEN REGULATION. INTERESTINGLY, HISTONE DEACETYLASE 1, A PROTEIN RESPONSIBLE FOR EPIGENETIC REGULATIONS, REPRESENTED THE MOST RELEVANT NODE WITHIN THE NETWORK. IN CONCLUSION, OUR STUDY PROVIDES A BASIS TO FIND ENDOTHELIAL DYSFUNCTION-RELATED BIOMARKERS AND EXPLORE NOVEL TARGETS IN ME/CFS. 2021 14 1025 33 CIRCULATING MIRNAS ARE ASSOCIATED WITH INFLAMMATION BIOMARKERS IN CHILDREN WITH OVERWEIGHT AND OBESITY: RESULTS OF THE I.FAMILY STUDY. INCREASING DATA SUGGEST THAT OVERNUTRITION-INDUCED OBESITY MAY TRIGGER AN INFLAMMATORY PROCESS IN ADIPOSE TISSUE AND UPTURN IN THE INNATE IMMUNE SYSTEM. NUMEROUS PLAYERS HAVE BEEN INVOLVED IN GOVERNING THE INFLAMMATORY RESPONSE, INCLUDING EPIGENETICS. AMONG EPIGENETIC PLAYERS, MIRNAS ARE EMERGING AS CRUCIAL REGULATORS OF IMMUNE CELL DEVELOPMENT, IMMUNE RESPONSES, AUTOIMMUNITY, AND INFLAMMATION. IN THIS STUDY, WE AIMED AT IDENTIFYING THE INVOLVEMENT OF CANDIDATE MIRNAS IN RELATION TO INFLAMMATION-ASSOCIATED BIOMARKERS IN A SUBSAMPLE OF EUROPEAN CHILDREN WITH OVERWEIGHT AND OBESITY PARTICIPATING IN THE I.FAMILY STUDY. THE STUDY SAMPLE INCLUDED INDIVIDUALS WITH INCREASED ADIPOSITY SINCE THIS CONDITION CONTRIBUTES TO THE EARLY OCCURRENCE OF CHRONIC LOW-GRADE INFLAMMATION. WE FOCUSED ON THE ACUTE-PHASE REAGENT C-REACTIVE PROTEIN (CRP) AS THE PRIMARY OUTCOME AND SELECTED CYTOKINES AS PLAUSIBLE BIOMARKERS OF INFLAMMATION. WE FOUND THAT CHRONIC LOW-GRADE CRP ELEVATION SHOWS A HIGHLY SIGNIFICANT ASSOCIATION WITH MIR-26B-3P AND HSA-MIR-576-5P IN BOYS. FURTHERMORE, THE ASSOCIATION OF CRP WITH HSA-MIR-10B-5P AND HSA-MIR-31-5P IS HIGHLY SIGNIFICANT IN GIRLS. WE ALSO OBSERVED MAJOR SEX-RELATED ASSOCIATIONS OF CANDIDATE MIRNAS WITH SELECTED CYTOKINES. EXCEPT FOR IL-6, A SIGNIFICANT ASSOCIATION OF HSA-MIR-26B-3P AND HSA-MIR-576-5P WITH TNF-ALPHA, IL1-RA, IL-8, AND IL-15 LEVELS WAS FOUND EXCLUSIVELY IN BOYS. THE FINDINGS OF THIS EXPLORATORY STUDY SUGGEST SEX DIFFERENCES IN THE ASSOCIATION OF CIRCULATING MIRNAS WITH INFLAMMATORY RESPONSE BIOMARKERS, AND INDICATE A POSSIBLE ROLE OF MIRNAS AMONG THE CANDIDATE EPIGENETIC MECHANISMS RELATED TO THE PROCESS OF LOW-GRADE INFLAMMATION IN CHILDHOOD OBESITY. 2022 15 5915 40 TARGETING A PHOSPHO-STAT3-MIRNAS PATHWAY IMPROVES VESICULAR HEPATIC STEATOSIS IN AN IN VITRO AND IN VIVO MODEL. NON-ALCOHOLIC FATTY LIVER DISEASE (NAFLD) IS A LEADING CAUSE OF CHRONIC LIVER DISEASE. ALTHOUGH GENETIC PREDISPOSITION AND EPIGENETIC FACTORS CONTRIBUTE TO THE DEVELOPMENT OF NAFLD, OUR UNDERSTANDING OF THE MOLECULAR MECHANISM INVOLVED IN THE PATHOGENESIS OF THE DISEASE IS STILL EMERGING. HERE WE INVESTIGATED A POSSIBLE ROLE OF A MICRORNAS-STAT3 PATHWAY IN THE INDUCTION OF HEPATIC STEATOSIS. DIFFERENTIATED HEPARG CELLS TREATED WITH THE FATTY ACID SODIUM OLEATE (FATTY DHEPARG) RECAPITULATED FEATURES OF LIVER VESICULAR STEATOSIS AND ACTIVATED A CELL-AUTONOMOUS INFLAMMATORY RESPONSE, INDUCING STAT3-TYROSINE-PHOSPHORYLATION. WITH A GENOME-WIDE APPROACH (CHROMATIN IMMUNOPRECIPITATION SEQUENCING), MANY PHOSPHO-STAT3 BINDING SITES WERE IDENTIFIED IN FATTY DHEPARG CELLS AND SEVERAL STAT3 AND/OR NAFLD-REGULATED MICRORNAS SHOWED INCREASED EXPRESSION LEVELS, INCLUDING MIR-21. INNOVATIVE CARS (COHERENT ANTI-STOKES RAMAN SCATTERING) MICROSCOPY REVEALED THAT CHEMICAL INHIBITION OF STAT3 ACTIVITY DECREASED LIPID ACCUMULATION AND DEREGULATED STAT3-RESPONSIVE MICRORNAS, INCLUDING MIR-21, IN LIPID OVERLOADED DHEPARG CELLS. WE WERE ABLE TO SHOW IN VIVO THAT REDUCING PHOSPHO-STAT3-MIR-21 LEVELS IN C57/BL6 MICE LIVER, BY LONG-TERM TREATMENT WITH METFORMIN, PROTECTED MICE FROM AGING-DEPENDENT HEPATIC VESICULAR STEATOSIS. OUR RESULTS IDENTIFIED A MICRORNAS-PHOSPHOSTAT3 PATHWAY INVOLVED IN THE DEVELOPMENT OF HEPATIC STEATOSIS, WHICH MAY REPRESENT A MOLECULAR MARKER FOR BOTH DIAGNOSIS AND THERAPEUTIC TARGETING. 2018 16 4059 37 MASSIVE ANALYSIS OF CDNA ENDS (MACE) AND MIRNA EXPRESSION PROFILING IDENTIFIES PROATHEROGENIC PATHWAYS IN CHRONIC KIDNEY DISEASE. EPIGENETIC DYSREGULATION CONTRIBUTES TO THE HIGH CARDIOVASCULAR DISEASE BURDEN IN CHRONIC KIDNEY DISEASE (CKD) PATIENTS. ALTHOUGH MICRORNAS (MIRNAS) ARE CENTRAL EPIGENETIC REGULATORS, WHICH SUBSTANTIALLY AFFECT THE DEVELOPMENT AND PROGRESSION OF CARDIOVASCULAR DISEASE (CVD), NO DATA ON MIRNA DYSREGULATION IN CKD-ASSOCIATED CVD ARE AVAILABLE UNTIL NOW. WE NOW PERFORMED HIGH-THROUGHPUT MIRNA SEQUENCING OF PERIPHERAL BLOOD MONONUCLEAR CELLS FROM TEN CLINICALLY STABLE HEMODIALYSIS (HD) PATIENTS AND TEN HEALTHY CONTROLS, WHICH ALLOWED US TO IDENTIFY 182 DIFFERENTIALLY EXPRESSED MIRNAS (E.G., MIR-21, MIR-26B, MIR-146B, MIR-155). TO TEST BIOLOGICAL RELEVANCE, WE AIMED TO CONNECT MIRNA DYSREGULATION TO DIFFERENTIAL GENE EXPRESSION. GENOME-WIDE GENE EXPRESSION PROFILING BY MACE (MASSIVE ANALYSIS OF CDNA ENDS) IDENTIFIED 80 GENES TO BE DIFFERENTIALLY EXPRESSED BETWEEN HD PATIENTS AND CONTROLS, WHICH COULD BE LINKED TO CARDIOVASCULAR DISEASE (E.G., KLF6, DUSP6, KLF4), TO INFECTION / IMMUNE DISEASE (E.G., ZFP36, SOCS3, JUND), AND TO DISTINCT PROATHEROGENIC PATHWAYS SUCH AS THE TOLL-LIKE RECEPTOR SIGNALING PATHWAY (E.G., IL1B, MYD88, TICAM2), THE MAPK SIGNALING PATHWAY (E.G., DUSP1, FOS, HSPA1A), AND THE CHEMOKINE SIGNALING PATHWAY (E.G., RHOA, PAK1, CXCL5). FORMAL INTERACTION NETWORK ANALYSIS PROVED BIOLOGICAL RELEVANCE OF MIRNA DYSREGULATION, AS 68 DIFFERENTIALLY EXPRESSED MIRNAS COULD BE CONNECTED TO 47 RECIPROCALLY EXPRESSED TARGET GENES. OUR STUDY IS THE FIRST COMPREHENSIVE MIRNA ANALYSIS IN CKD THAT LINKS DYSREGULATED MIRNA EXPRESSION WITH DIFFERENTIAL EXPRESSION OF GENES CONNECTED TO INFLAMMATION AND CVD. AFTER RECENT ANIMAL DATA SUGGESTED THAT TARGETING MIRNAS IS BENEFICIAL IN EXPERIMENTAL CVD, OUR DATA MAY NOW SPUR FURTHER RESEARCH IN THE FIELD OF CKD-ASSOCIATED HUMAN CVD. 2014 17 5144 34 POTENTIAL ROLE OF LNCRNA-TSIX, MIR-548-A-3P, AND SOGA1 MRNA IN THE DIAGNOSIS OF HEPATOCELLULAR CARCINOMA. RECENT TRENDS ARE MOVING TOWARDS THE USE OF THE CIRCULATING TRANSCRIPTOME AS A POTENTIAL DIAGNOSTIC AND THERAPEUTIC TOOL FOR HEPATOCELLULAR CARCINOMA (HCC). THE AIM OF THIS STUDY IS TO IDENTIFY CIRCULATORY RNA BASED BIOMARKER PANEL, IN ADDITION TO THEIR RELATIONSHIP TO THE OUTCOME IN HCC. FIRST, UTILIZING BIOINFORMATICS TOOLS, WE SELECTED AN HCC-SPECIFIC RNA-BASED BIOMARKER PANEL THAT DEPENDED ON THE INTEGRATION OF SUPPRESSOR OF GLUCOSE AUTOPHAGY-ASSOCIATED (SOGA1) GENE EXPRESSION WITH THE CHOSEN PANEL OF EPIGENETIC REGULATORS OF THIS GENE [LONG NON-CODING RNA ANTISENSE FOR X-INACTIVE-SPECIFIC TRANSCRIPT (LNCRNA-TSIX) AND MICRORNA-548-A-3P (MIR-548-A-3P)]. SECOND, WE ATTEMPTED TO VALIDATE THESE BIOMARKERS USING THE SERA OF 65 PATIENTS WITH HCC, 34 PATIENTS WITH CHRONIC HEPATITIS C VIRUS (CHC) INFECTION AND 32 HEALTHY VOLUNTEERS. FINALLY, THE EXPRESSION LEVELS OF THE CHOSEN RNA-BASED BIOMARKER PANEL WERE ASSESSED IN THE SERUM SAMPLES USING QRT-PCR ASSAYS. THE PANEL OF 3 RNA-BASED BIOMARKERS (LNCRNA-TSIX, MIR-548-A-3P, AND SOGA1) EXHIBITED HIGH SENSITIVITY AND SPECIFICITY IN DIFFERENTIATING HCC PATIENTS FROM CHC PATIENTS AND HEALTHY CONTROLS. AMONG THESE 3 RNAS, SERUM LNCRNA-TSIX AND SOGA1 WERE INDEPENDENT PROGNOSTIC FACTOR. THE CHOSEN CIRCULATORY RNA-BASED BIOMARKER PANEL MAY SERVE AS A DIAGNOSTIC AND PROGNOSTIC BIOMARKER FOR HCC. 2019 18 443 31 AORTA MACROPHAGE INFLAMMATORY AND EPIGENETIC CHANGES IN A MURINE MODEL OF OBSTRUCTIVE SLEEP APNEA: POTENTIAL ROLE OF CD36. OBSTRUCTIVE SLEEP APNEA (OSA) AFFECTS 8-10% OF THE POPULATION, IS CHARACTERIZED BY CHRONIC INTERMITTENT HYPOXIA (CIH), AND CAUSALLY ASSOCIATES WITH CARDIOVASCULAR MORBIDITIES. IN CIH-EXPOSED MICE, CLOSELY MIMICKING THE CHRONICITY OF HUMAN OSA, INCREASED ACCUMULATION AND PROLIFERATION OF PRO-INFLAMMATORY METABOLIC M1-LIKE MACROPHAGES HIGHLY EXPRESSING CD36, EMERGED IN AORTA. TRANSCRIPTOMIC AND MEDIP-SEQ APPROACHES IDENTIFIED ACTIVATION OF PRO-ATHEROGENIC PATHWAYS INVOLVING A COMPLEX INTERPLAY OF HISTONE MODIFICATIONS IN FUNCTIONALLY-RELEVANT BIOLOGICAL PATHWAYS, SUCH AS INFLAMMATION AND OXIDATIVE STRESS IN AORTA MACROPHAGES. DISCONTINUATION OF CIH DID NOT ELICIT SIGNIFICANT IMPROVEMENTS IN AORTA WALL MACROPHAGE PHENOTYPE. HOWEVER, CIH-INDUCED AORTA CHANGES WERE ABSENT IN CD36 KNOCKOUT MICE, OUR RESULTS PROVIDE MECHANISTIC INSIGHTS SHOWING THAT CIH EXPOSURES DURING SLEEP IN ABSENCE OF CONCURRENT PRO-ATHEROGENIC SETTINGS (I.E., GENETIC PROPENSITY OR DIETARY MANIPULATION) LEAD TO THE RECRUITMENT OF CD36(+)(HIGH) MACROPHAGES TO THE AORTIC WALL AND TRIGGER ATHEROGENESIS. FURTHERMORE, LONG-TERM CIH-INDUCED CHANGES MAY NOT BE REVERSIBLE WITH USUAL OSA TREATMENT. 2017 19 5236 43 PROFILING NON-CODING RNA LEVELS WITH CLINICAL CLASSIFIERS IN PEDIATRIC CROHN'S DISEASE. BACKGROUND: CROHN'S DISEASE (CD) IS A HERITABLE CHRONIC INFLAMMATORY DISORDER. NON-CODING RNAS (NCRNAS) PLAY AN IMPORTANT ROLE IN EPIGENETIC REGULATION BY AFFECTING GENE EXPRESSION, BUT CAN ALSO DIRECTLY AFFECT PROTEIN FUNCTION, THUS HAVING A SUBSTANTIAL IMPACT ON BIOLOGICAL PROCESSES. WE INVESTIGATED WHETHER NON-CODING RNAS (NCRNA) AT DIAGNOSIS ARE DYSREGULATED DURING CD AT DIFFERENT CD LOCATIONS AND FUTURE DISEASE BEHAVIORS TO DETERMINE IF NCRNA SIGNATURES CAN SERVE AS AN INDEX TO OUTCOMES. METHODS: USING SUBJECTS BELONGING TO THE RISK COHORT, WE ANALYZED NCRNA FROM THE ILEAL BIOPSIES OF 345 CD AND 71 NON-IBD CONTROLS, AND NCRNA FROM RECTAL BIOPSIES OF 329 CD AND 61 NON-IBD CONTROLS. SEQUENCE ALIGNMENT WAS DONE (STAR PACKAGE) USING HUMAN GENOME VERSION 38 (HG38) AS REFERENCE PANEL. THE DIFFERENTIAL EXPRESSION (DE) ANALYSIS WAS PERFORMED WITH EDGER PACKAGE AND DE NCRNAS WERE IDENTIFIED WITH A THRESHOLD OF FOLD CHANGE (FC) > 2 AND FDR < 0.05 AFTER MULTIPLE TEST CORRECTIONS. RESULTS: IN TOTAL, WE IDENTIFIED 130 CD SPECIFIC DE NCRNAS (89 IN ILEUM AND 41 IN RECTUM) WHEN COMPARED TO NON-IBD CONTROLS. SIMILARLY, 35 DE NCRNAS WERE IDENTIFIED BETWEEN B1 AND B2 IN ILEUM, WHEREAS NO DIFFERENCES AMONG CD DISEASE BEHAVIORS WERE NOTICED IN RECTUM. WE ALSO FOUND INFLAMMATION SPECIFIC NCRNAS BETWEEN INFLAMED AND NON-INFLAMED GROUPS IN ILEAL BIOPSIES. OVERALL, WE OBSERVED THAT EXPRESSION OF MIR1244-2, MIR1244-3, MIR1244-4, AND RN7SL2 WERE INCREASED DURING CD, REGARDLESS OF DISEASE BEHAVIOR, LOCATION, OR INFLAMMATORY STATUS. LASTLY, WE TESTED NCRNA EXPRESSION AT BASELINE AS POTENTIAL TOOL TO PREDICT THE DISEASE STATUS, DISEASE BEHAVIORS AND DISEASE INFLAMMATION AT 3-YEAR FOLLOW UP. CONCLUSIONS: WE HAVE IDENTIFIED NCRNAS THAT ARE SPECIFIC TO DISEASE LOCATION, DISEASE BEHAVIOR, AND DISEASE INFLAMMATION IN CD. BOTH ILEAL AND RECTAL SPECIFIC NCRNA ARE CHANGING OVER THE COURSE OF CD, SPECIFICALLY DURING THE DISEASE PROGRESSION IN THE INTESTINAL MUCOSA. COLLECTIVELY, OUR FINDINGS SHOW CHANGES IN NCRNA DURING CD AND MAY HAVE A CLINICAL UTILITY IN EARLY IDENTIFICATION AND CHARACTERIZATION OF DISEASE PROGRESSION. 2021 20 4300 38 MICRORNA-19A CONTRIBUTES TO THE EPIGENETIC REGULATION OF TISSUE FACTOR IN DIABETES. BACKGROUND: DIABETES MELLITUS IS CHARACTERIZED BY CHRONIC VASCULAR DISORDER AND PRESENTS A MAIN RISK FACTOR FOR CARDIOVASCULAR MORTALITY. IN PARTICULAR, HYPERGLYCAEMIA AND INFLAMMATORY CYTOKINES INDUCE VASCULAR CIRCULATING TISSUE FACTOR (TF) THAT PROMOTES PRO-THROMBOTIC CONDITIONS IN DIABETES. IT HAS RECENTLY BECOME EVIDENT THAT ALTERATIONS OF THE POST-TRANSCRIPTIONAL REGULATION OF TF VIA SPECIFIC MICRORNA(MIR)S, SUCH AS MIR-126, CONTRIBUTE TO THE PATHOGENESIS OF DIABETES AND ITS COMPLICATIONS. THE ENDOTHELIAL MIR-19A IS INVOLVED IN VASCULAR HOMEOSTASIS AND ATHEROPROTECTION. HOWEVER, ITS ROLE IN DIABETES-RELATED THROMBOGENICITY IS UNKNOWN. UNDERSTANDING MIR-NETWORKS REGULATING PROCOAGULABILITY IN DIABETES MAY HELP TO DEVELOP NEW TREATMENT OPTIONS PREVENTING VASCULAR COMPLICATIONS. METHODS AND RESULTS: PLASMA OF 44 PATIENTS WITH KNOWN DIABETES WAS ASSESSED FOR THE EXPRESSION OF MIR-19A, TF PROTEIN, TF ACTIVITY, AND MARKERS FOR VASCULAR INFLAMMATION. HIGH MIR-19A EXPRESSION WAS ASSOCIATED WITH REDUCED TF PROTEIN, TF-MEDIATED PROCOAGULABILITY, AND VASCULAR INFLAMMATION BASED ON EXPRESSION OF VASCULAR ADHESION MOLECULE-1 AND LEUKOCYTE COUNT. WE FOUND PLASMA EXPRESSION OF MIR-19A TO STRONGLY CORRELATE WITH MIR-126. MIR-19A REDUCED THE TF EXPRESSION ON MRNA AND PROTEIN LEVEL IN HUMAN MICROVASCULAR ENDOTHELIAL CELLS (HMEC) AS WELL AS TF ACTIVITY IN HUMAN MONOCYTES (THP-1), WHILE ANTI-MIR-19A INCREASED THE TF EXPRESSION. INTERESTINGLY, MIR-19A INDUCED VCAM EXPRESSION IN HMEC. HOWEVER, MIR-19A AND MIR-126 CO-TRANSFECTION REDUCED TOTAL ENDOTHELIAL VCAM EXPRESSION AND EXHIBITED ADDITIVE INHIBITION OF A LUCIFERASE REPORTER CONSTRUCT CONTAINING THE F3 3'UTR. CONCLUSIONS: WHILE BOTH MIRS HAVE DIFFERENTIAL FUNCTIONS ON ENDOTHELIAL VCAM EXPRESSION, MIR-19A AND MIR-126 COOPERATE TO EXHIBIT ANTI-THROMBOTIC PROPERTIES VIA REGULATING VASCULAR TF EXPRESSION. MODULATING THE POST-TRANSCRIPTIONAL CONTROL OF TF IN DIABETES MAY PROVIDE A FUTURE ANTI-THROMBOTIC AND ANTI-INFLAMMATORY THERAPY. 2018