1 2735 143 EXPLORING THE RELATIONSHIP BETWEEN EPIGENETIC DNA METHYLATION AND CARDIAC FIBROSIS THROUGH RAMAN MICROSPECTROSCOPY. CARDIOMYOPATHIES ARE ASSOCIATED WITH FIBROTIC REMODELING OF THE HEART, WHICH IS CHARACTERIZED BY THE EXCESSIVE ACCUMULATION OF COLLAGEN TYPE I (COL I) DUE TO CHRONIC INFLAMMATION AND SUSPECTED EPIGENETIC INFLUENCES. DESPITE THE SEVERITY AND HIGH MORTALITY RATE OF CARDIAC FIBROSIS, CURRENT TREATMENT OPTIONS ARE OFTEN INADEQUATE, UNDERSCORING THE IMPORTANCE OF GAINING A DEEPER UNDERSTANDING OF THE DISEASE'S UNDERLYING MOLECULAR AND CELLULAR MECHANISMS. IN THIS STUDY, THE EXTRACELLULAR MATRIX (ECM) AND NUCLEI IN FIBROTIC AREAS OF DIFFERENT CARDIOMYOPATHIES WERE MOLECULARLY CHARACTERIZED BY RAMAN MICROSPECTROSCOPY AND IMAGING AND COMPARED WITH THE CONTROL MYOCARDIUM. PATIENT SAMPLES WERE OBTAINED FROM HEART TISSUE AFFECTED BY ISCHEMIA, HYPERTROPHY, AND DILATED CARDIOMYOPATHY AND ANALYZED FOR FIBROSIS THROUGH CONVENTIONAL HISTOLOGY AND MARKER-INDEPENDENT RAMAN MICROSPECTROSCOPY (RMS). PROMINENT DIFFERENCES BETWEEN CONTROL MYOCARDIUM AND CARDIOMYOPATHIES WERE REVEALED BY SPECTRAL DECONVOLUTION OF COL I RAMAN SPECTRA. STATISTICALLY SIGNIFICANT DIFFERENCES WERE IDENTIFIED IN THE AMIDE I REGION OF SPECTRAL SUBPEAK AT 1,608 CM(-1), WHICH IS A REPRESENTATIVE ENDOGENOUS MARKER FOR ALTERATIONS IN THE STRUCTURAL CONFORMATION OF COL I FIBERS. MOREOVER, EPIGENETIC 5MC DNA MODIFICATION WAS IDENTIFIED WITHIN CELL NUCLEI BY MULTIVARIATE ANALYSIS. A STATISTICALLY SIGNIFICANT INCREASE IN SIGNAL INTENSITIES OF SPECTRAL FEATURES INDICATIVE OF DNA METHYLATION WAS DETECTED IN CARDIOMYOPATHIES IN ACCORDANCE WITH IMMUNOFLUORESCENCE 5MC STAINING. OVERALL, RMS IS A VERSATILE TECHNOLOGY IN THE DISCRIMINATION OF CARDIOMYOPATHIES BASED ON MOLECULAR EVALUATION OF COL I AND NUCLEI WHILE PROVIDING INSIGHTS INTO THE PATHOGENESIS OF THE DISEASES.NEW & NOTEWORTHY CARDIOMYOPATHIES ARE ASSOCIATED WITH SEVERE FIBROTIC REMODELING OF THE HEART, WHICH IS CHARACTERIZED BY THE EXCESSIVE ACCUMULATION OF COLLAGEN TYPE I (COL I). IN THIS STUDY, WE USED MARKER-INDEPENDENT RAMAN MICROSPECTROSCOPY (RMS) TO GAIN A DEEPER UNDERSTANDING OF THE DISEASE'S UNDERLYING MOLECULAR AND CELLULAR MECHANISMS. 2023 2 1339 33 DESIGN, SYNTHESIS, BIOLOGICAL EVALUATION, AND STRUCTURAL CHARACTERIZATION OF POTENT HISTONE DEACETYLASE INHIBITORS BASED ON CYCLIC ALPHA/BETA-TETRAPEPTIDE ARCHITECTURES. HISTONE DEACETYLASES (HDACS) ARE A FAMILY OF ENZYMES FOUND IN BACTERIA, FUNGI, PLANTS, AND ANIMALS THAT PROFOUNDLY AFFECT CELLULAR FUNCTION BY CATALYZING THE REMOVAL OF ACETYL GROUPS FROM -N-ACETYLATED LYSINE RESIDUES OF VARIOUS PROTEIN SUBSTRATES INCLUDING HISTONES, TRANSCRIPTION FACTORS, ALPHA-TUBULIN, AND NUCLEAR IMPORTERS. ALTHOUGH THE PRECISE ROLES OF HDAC ISOFORMS IN CELLULAR FUNCTION ARE NOT YET COMPLETELY UNDERSTOOD, INHIBITION OF HDAC ACTIVITY HAS EMERGED AS A PROMISING APPROACH FOR REVERSING THE ABERRANT EPIGENETIC STATES ASSOCIATED WITH CANCER AND OTHER CHRONIC DISEASES. POTENT NEW ISOFORM-SELECTIVE HDAC INHIBITORS WOULD THEREFORE HELP EXPAND OUR UNDERSTANDING OF THE HDAC ENZYMES AND REPRESENT ATTRACTIVE LEAD COMPOUNDS FOR DRUG DESIGN, ESPECIALLY IF COMBINED WITH HIGH-RESOLUTION STRUCTURAL ANALYSES OF SUCH INHIBITORS TO SHED LIGHT ON THE THREE-DIMENSIONAL PHARMACOPHORIC FEATURES NECESSARY FOR THE FUTURE DESIGN OF MORE POTENT AND SELECTIVE COMPOUNDS. HERE WE PRESENT STRUCTURAL AND FUNCTIONAL ANALYSES OF A SERIES OF BETA-AMINO-ACID-CONTAINING HDAC INHIBITORS INSPIRED BY CYCLIC TETRAPEPTIDE NATURAL PRODUCTS. TO SURVEY A DIVERSE ENSEMBLE OF PHARMACOPHORIC CONFIGURATIONS, WE SYSTEMATICALLY VARIED THE POSITION OF THE BETA-AMINO ACID, AMINO ACID CHIRALITY, FUNCTIONALIZATION OF THE ZN(2+)-COORDINATING AMINO ACID SIDE CHAIN, AND ALKYLATION OF THE BACKBONE AMIDE NITROGEN ATOMS AROUND THE MACROCYCLE. IN MANY CASES, THE COMPOUNDS WERE A SINGLE CONFORMATION IN SOLUTION AND EXHIBITED POTENT ACTIVITIES AGAINST A NUMBER OF HDAC ISOFORMS AS WELL AS EFFECTIVE ANTIPROLIFERATIVE AND CYTOTOXIC ACTIVITIES AGAINST HUMAN TUMOR CELLS. HIGH-RESOLUTION NMR SOLUTION STRUCTURES WERE DETERMINED FOR A SELECTION OF THE INHIBITORS, PROVIDING A USEFUL MEANS OF CORRELATING DETAILED STRUCTURAL INFORMATION WITH POTENCY. THE STRUCTURE-BASED APPROACH DESCRIBED HERE IS EXPECTED TO FURNISH VALUABLE INSIGHTS TOWARD THE FUTURE DESIGN OF MORE SELECTIVE HDAC INHIBITORS. 2009 3 1103 26 COMBINED DUAL EFFECT OF MODULATION OF HUMAN NEUTROPHILS' OXIDATIVE BURST AND INHIBITION OF COLON CANCER CELLS PROLIFERATION BY HYDROXYCINNAMIC ACID DERIVATIVES. COLON CANCER IS ONE OF THE MOST INCIDENT CANCERS IN THE WESTERN WORLD. WHILE BOTH GENETIC AND EPIGENETIC FACTORS MAY CONTRIBUTE TO THE DEVELOPMENT OF COLON CANCER, IT IS KNOWN THAT CHRONIC INFLAMMATION ASSOCIATED TO EXCESSIVE PRODUCTION OF REACTIVE OXYGEN AND NITROGEN SPECIES BY PHAGOCYTES MAY ULTIMATELY INITIATE THE MULTISTEP PROCESS OF COLON CANCER DEVELOPMENT. PHENOLIC COMPOUNDS, WHICH REVEAL ANTIOXIDANT AND ANTIPROLIFERATIVE ACTIVITIES IN COLON CANCER CELLS, CAN BE A GOOD APPROACH TO SURPASS THIS PROBLEM. IN THIS WORK, HYDROXYCINNAMIC AMIDES AND THE RESPECTIVE ACID PRECURSORS WERE TESTED IN VITRO FOR THEIR CAPACITY TO MODULATE HUMAN NEUTROPHILS' OXIDATIVE BURST AND SIMULTANEOUSLY TO INHIBIT GROWTH OF COLON CANCER CELLS. A PHENOLIC AMIDE DERIVATIVE, CAFFEIC ACID HEXYLAMIDE (CAHA) (4) WAS FOUND TO BE THE MOST ACTIVE COMPOUND IN BOTH ASSAYS, INHIBITING HUMAN NEUTROPHILS' OXIDATIVE BURST, RESTRAINING THE INFLAMMATORY PROCESS, INHIBITING GROWTH OF COLON CANCER CELLS AND TRIGGERING MITOCHONDRIAL DYSFUNCTION THAT LEADS CANCER CELLS TO APOPTOSIS. ALTOGETHER, THESE ACHIEVEMENTS CAN CONTRIBUTE TO THE UNDERSTANDING OF THE RELATIONSHIP BETWEEN ANTIOXIDANT AND ANTICANCER ACTIVITIES AND BASED ON THE STRUCTURE-ACTIVITY RELATIONSHIPS (SAR) ESTABLISHED CAN BE THE STARTING POINT TO FIND MORE EFFECTIVE PHENOLIC COMPOUNDS AS ANTICANCER AGENTS. 2016 4 6058 33 THE DEFICIENCY OF N6-METHYLADENOSINE DEMETHYLASE ALKBH5 ENHANCES THE NEURODEGENERATIVE DAMAGE INDUCED BY COBALT. COBALT EXPOSURE, EVEN AT LOW CONCENTRATIONS, INDUCES NEURODEGENERATIVE DAMAGE, SUCH AS ALZHEIMER'S DISEASE (AD). THE SPECIFIC UNDERLYING MECHANISMS REMAIN UNCLEAR. OUR PREVIOUS STUDY DEMONSTRATED THAT M(6)A METHYLATION ALTERATION IS INVOLVED IN COBALT-INDUCED NEURODEGENERATIVE DAMAGE, SUCH AS IN AD. HOWEVER, THE ROLE OF M(6)A RNA METHYLATION AND ITS UNDERLYING MECHANISMS ARE POORLY UNDERSTOOD. IN THIS STUDY, BOTH EPIDEMIOLOGICAL AND LABORATORY STUDIES SHOWED THAT COBALT EXPOSURE COULD DOWNREGULATE THE EXPRESSION OF THE M(6)A DEMETHYLASE ALKBH5, SUGGESTING A KEY ROLE FOR ALKBH5. MOREOVER, METHYLATED RNA IMMUNOPRECIPITATION AND SEQUENCING (MERIP-SEQ) ANALYSIS REVEALED THAT ALKBH5 DEFICIENCY IS ASSOCIATED WITH NEURODEGENERATIVE DISEASES. KEGG PATHWAY AND GENE ONTOLOGY ANALYSES FURTHER REVEALED THAT THE DIFFERENTIALLY M(6)A-MODIFIED GENES RESULTING FROM ALKBH5 DOWNREGULATION AND COBALT EXPOSURE WERE AGGREGATED IN THE PATHWAYS OF PROLIFERATION, APOPTOSIS, AND AUTOPHAGY. SUBSEQUENTLY, ALKBH5 DEFICIENCY WAS SHOWN TO EXACERBATE CELL VIABILITY DECLINE, MOTIVATE CELL APOPTOSIS AND ATTENUATE CELL AUTOPHAGY INDUCED BY COBALT WITH EXPERIMENTAL TECHNIQUES OF GENE OVEREXPRESSION/INHIBITION. IN ADDITION, MORPHOLOGICAL CHANGES IN NEURONS AND THE EXPRESSION OF AD-RELATED PROTEINS, SUCH AS APP, P-TAU, AND TAU, IN THE CEREBRAL HIPPOCAMPUS OF WILD-TYPE AND ALKBH5 KNOCKOUT MICE AFTER CHRONIC COBALT EXPOSURE WERE ALSO INVESTIGATED. BOTH IN VITRO AND IN VIVO RESULTS SHOWED THAT LOWER EXPRESSION OF ALKBH5 AGGRAVATED COBALT-INDUCED NEURODEGENERATIVE DAMAGE. THESE RESULTS SUGGEST THAT ALKBH5, AS AN EPIGENETIC REGULATOR, COULD BE A POTENTIAL TARGET FOR ALLEVIATING COBALT-INDUCED NEURODEGENERATIVE DAMAGE. IN ADDITION, WE PROPOSE A NOVEL STRATEGY FOR THE PREVENTION AND TREATMENT OF ENVIRONMENTAL TOXICANT-RELATED NEURODEGENERATION FROM AN EPIGENETIC PERSPECTIVE. 2023 5 1139 25 COMPUTATIONAL METHODS FOR EPIGENETIC DRUG DISCOVERY: A FOCUS ON ACTIVITY LANDSCAPE MODELING. EPIGENETIC DRUG DISCOVERY IS AN EMERGING STRATEGY AGAINST SEVERAL CHRONIC AND COMPLEX DISEASES. THE INCREASED INTEREST IN EPIGENETICS HAS BOOSTED THE DEVELOPMENT AND MAINTENANCE OF LARGE INFORMATION ON STRUCTURE-EPIGENETIC ACTIVITY RELATIONSHIPS FOR SEVERAL EPIGENETIC TARGETS. IN TURN, SUCH LARGE DATABASES-MANY IN THE PUBLIC DOMAIN-ARE A RICH SOURCE OF INFORMATION TO EXPLORE THEIR STRUCTURE-ACTIVITY RELATIONSHIPS (SARS). HEREIN, WE CONDUCTED A LARGE-SCALE ANALYSIS OF THE SAR OF EPIGENETIC TARGETS USING THE CONCEPT OF ACTIVITY LANDSCAPE MODELING. A COMPREHENSIVE QUANTITATIVE ANALYSIS AND A NOVEL VISUAL REPRESENTATION OF THE EPIGENETIC ACTIVITY LANDSCAPE ENABLED THE RAPID IDENTIFICATION OF REGIONS OF TARGETS WITH CONTINUOUS AND DISCONTINUOUS SAR. THIS INFORMATION LED TO THE IDENTIFICATION OF EPIGENETIC TARGETS FOR WHICH IT IS ANTICIPATED AN EASIER OR A MORE DIFFICULT DRUG-DISCOVERY PROGRAM USING CONVENTIONAL HIT-TO-LEAD APPROACHES. THE INSIGHTS OF THIS WORK ALSO ENABLED THE IDENTIFICATION OF SPECIFIC STRUCTURAL CHANGES ASSOCIATED WITH A LARGE SHIFT IN BIOLOGICAL ACTIVITY. TO THE BEST OF OUR KNOWLEDGE, THIS WORK REPRESENTS THE LARGEST COMPREHENSIVE SAR ANALYSIS OF SEVERAL EPIGENETIC TARGETS AND CONTRIBUTES TO THE BETTER UNDERSTANDING OF THE EPIGENETIC ACTIVITY LANDSCAPE. 2018 6 3493 32 IDENTIFICATION OF KEY GENES, PATHWAYS, AND MIRNA/MRNA REGULATORY NETWORKS OF CUMS-INDUCED DEPRESSION IN NUCLEUS ACCUMBENS BY INTEGRATED BIOINFORMATICS ANALYSIS. INTRODUCTION: MAJOR DEPRESSIVE DISORDER (MDD) IS A RECURRENT, DEVASTATING MENTAL DISORDER, WHICH AFFECTS >350 MILLION PEOPLE WORLDWIDE, AND EXERTS SUBSTANTIAL PUBLIC HEALTH AND FINANCIAL COSTS TO SOCIETY. THUS, THERE IS A SIGNIFICANT NEED TO DISCOVER INNOVATIVE THERAPEUTICS TO TREAT DEPRESSION EFFICIENTLY. STRESS-INDUCED DYSFUNCTION IN THE SUBTYPE OF NEURONAL CELLS AND THE CHANGE OF SYNAPTIC PLASTICITY AND STRUCTURAL PLASTICITY OF NUCLEUS ACCUMBENS (NAC) ARE IMPLICATED IN DEPRESSION SYMPTOMOLOGY. HOWEVER, THE MOLECULAR AND EPIGENETIC MECHANISMS AND STRESSES TO THE NAC PATHOLOGICAL CHANGES IN DEPRESSION REMAIN ELUSIVE. MATERIALS AND METHODS: IN THIS STUDY, TREATMENT GROUP MICE WERE TREATED CONTINUALLY WITH THE CHRONIC UNPREDICTABLE MILD STRESS (CUMS) UNTIL EXPRESSION OF DEPRESSION-LIKE BEHAVIORS WERE FOUND. DEPRESSION WAS CONFIRMED WITH SUCROSE PREFERENCE, NOVELTY-SUPPRESSED FEEDING, FORCED SWIMMING, AND TAIL SUSPENSION TESTS. WE APPLIED HIGH-THROUGHPUT RNA SEQUENCING TO ASSESS MICRORNA EXPRESSION AND TRANSCRIPTIONAL PROFILES IN THE NAC TISSUE FROM DEPRESSION-LIKE BEHAVIORS MICE AND CONTROL MICE. THE REGULATORY NETWORK OF MIRNAS/MRNAS WAS CONSTRUCTED BASED ON THE HIGH-THROUGHPUT RNA SEQUENCE AND BIOINFORMATICS SOFTWARE PREDICTIONS. RESULTS: A TOTAL OF 17 MIRNAS AND 10 MRNAS WERE SIGNIFICANTLY UPREGULATED IN THE NAC OF CUMS-INDUCED MICE WITH DEPRESSION-LIKE BEHAVIORS, AND 12 MIRNAS AND 29 MRNAS WERE DOWNREGULATED. A SERIES OF BIOINFORMATICS ANALYSES SHOWED THAT THESE ALTERED MIRNAS PREDICTED TARGET MRNA AND DIFFERENTIALLY EXPRESSED MRNAS WERE SIGNIFICANTLY ENRICHED IN THE MAPK SIGNALING PATHWAY, GABAERGIC SYNAPSE, DOPAMINERGIC SYNAPSE, CYTOKINE-CYTOKINE RECEPTOR INTERACTION, AXON GUIDANCE, REGULATION OF AUTOPHAGY, AND SO ON. FURTHERMORE, DUAL LUCIFERASE REPORT ASSAY AND QRT-PCR RESULTS VALIDATED THE MIRNA/MRNA REGULATORY NETWORK. CONCLUSION: THE DETERIORATIONS OF GABAERGIC SYNAPSES, DOPAMINERGIC SYNAPSES, NEUROTRANSMITTER SYNTHESIS, AS WELL AS AUTOPHAGY-ASSOCIATED APOPTOTIC PATHWAY ARE ASSOCIATED WITH THE MOLECULAR PATHOLOGICAL MECHANISM OF CUMS-INDUCED DEPRESSION. 2019 7 4707 29 NMR PLASMA METABOLOMICS STUDY OF PATIENTS OVERCOMING ACUTE MYOCARDIAL INFARCTION: IN THE FIRST 12 H AFTER ONSET OF CHEST PAIN WITH STATISTICAL DISCRIMINATION TOWARDS METABOLOMIC BIOMARKERS. ACUTE MYOCARDIAL INFARCTION (AMI) IS ONE OF THE LEADING CAUSES OF DEATH AMONG ADULTS IN OLDER AGE. UNDERSTANDING MECHANISMS HOW ORGANISM RESPONDS TO ISCHEMIA IS ESSENTIAL FOR THE ISCHEMIC PATIENT'S PREVENTION AND TREATMENT. DESPITE THE GREAT PREVALENCE AND INCIDENCE ONLY A SMALL NUMBER OF STUDIES UTILIZE A METABOLOMIC APPROACH TO DESCRIBE AMI CONDITION. RECENT STUDIES HAVE SHOWN THE IMPACT OF METABOLITES ON EPIGENETIC CHANGES, IN THESE STUDIES PLASMA METABOLITES WERE RELATED TO NEUROLOGICAL OUTCOME OF THE PATIENTS MAKING METABOLOMIC STUDIES INCREASINGLY INTERESTING. THE AIM OF THIS STUDY WAS TO DESCRIBE METABOLOMIC RESPONSE OF AN ORGANISM TO ISCHEMIC STRESS THROUGH THE CHANGES IN ENERGETIC METABOLITES AND AMINOACIDS IN BLOOD PLASMA IN PATIENTS OVERCOMING ACUTE MYOCARDIAL INFARCTION. BLOOD PLASMA FROM PATIENTS IN THE FIRST 12 H AFTER ONSET OF CHEST PAIN WAS COLLECTED AND COMPARED WITH VOLUNTEERS WITHOUT ANY HISTORY OF ISCHEMIC DISEASES VIA NMR SPECTROSCOPY. LOWERED PLASMA LEVELS OF PYRUVATE, ALANINE, GLUTAMINE AND NEUROTRANSMITTER PRECURSORS TYROSINE AND TRYPTOPHAN WERE FOUND. FURTHER, WE OBSERVED INCREASED PLASMA LEVELS OF 3-HYDROXYBUTYRATE AND ACETOACETATE IN BALANCE WITH DECREASED LEVEL OF LIPOPROTEINS FRACTION, SUGGESTING THE ONGOING KETONIC STATE OF AN ORGANISM. DISCRIMINATORY ANALYSIS SHOWED VERY PROMISING PERFORMANCE WHERE COMPOUNDS: LIPOPROTEINS, ALANINE, PYRUVATE, GLUTAMINE, TRYPTOPHAN AND 3-HYDROXYBUTYRATE WERE OF THE HIGHEST DISCRIMINATORY POWER WITH FEASIBILITY OF SUCCESSFUL STATISTICAL DISCRIMINATION. 2020 8 5074 25 PHYSIOLOGIC AND EPIGENETIC EFFECTS OF NUTRIENTS ON DISEASE PATHWAYS. BACKGROUND/OBJECTIVES: EPIGENETIC REGULATION BY NUTRIENTS CAN INFLUENCE THE DEVELOPMENT OF SPECIFIC DISEASES. THIS STUDY SOUGHT TO EXAMINE THE EFFECT OF INDIVIDUAL NUTRIENTS AND NUTRIENT FAMILIES IN THE CONTEXT OF PREVENTING CHRONIC METABOLIC DISEASES VIA EPIGENETIC REGULATION. THE INHIBITION OF LIPID ACCUMULATION AND INFLAMMATION BY NUTRIENTS INCLUDING PROTEINS, LIPIDS, VITAMINS, AND MINERALS WERE OBSERVED, AND HISTONE ACETYLATION BY HISTONE ACETYLTRANSFERASE (HAT) WAS MEASURED. CORRELATIVE ANALYSES WERE ALSO PERFORMED. MATERIALS/METHODS: NUTRIENTS WERE SELECTED ACCORDING TO INFORMATION FROM THE KOREAN MINISTRY OF FOOD AND DRUG SAFETY. SELECTED NUTRIENT FUNCTIONALITIES, INCLUDING THE ATTENUATION OF FATTY ACID-INDUCED LIPID ACCUMULATION AND LIPOPOLYSACCHARIDE-MEDIATED ACUTE INFLAMMATION WERE EVALUATED IN MOUSE MACROPHAGE RAW264.7 AND MOUSE HEPATOCYTE AML-12 CELLS. EFFECTS OF THE SELECTED NUTRIENTS ON IN VITRO HAT INHIBITION WERE ALSO EVALUATED. RESULTS: NITRIC OXIDE (NO) PRODUCTION CORRELATED WITH HAT ACTIVITY, WHICH WAS REGULATED BY THE AMINO ACIDS GROUP, SUGGESTING THAT AMINO ACIDS POTENTIALLY CONTRIBUTE TO THE ATTENUATION OF NO PRODUCTION VIA THE INHIBITION OF HAT ACTIVITY. UNSATURATED FATTY ACIDS TENDED TO ATTENUATE INFLAMMATION BY INHIBITING NO PRODUCTION, WHICH MAY BE ATTRIBUTABLE TO THE INHIBITION OF IN VITRO HAT ACTIVITY. IN CONTRAST TO WATER-SOLUBLE VITAMINS, THE LIPID-SOLUBLE VITAMINS SIGNIFICANTLY DECREASED NO PRODUCTION. WATER- AND LIPID-SOLUBLE VITAMINS BOTH EXHIBITED SIGNIFICANT INHIBITORY ACTIVITIES AGAINST HAT. IN ADDITION, CALCIUM AND MANGANESE SIGNIFICANTLY INHIBITED LIPID ACCUMULATION, NO PRODUCTION, AND HAT ACTIVITY. CONCLUSIONS: SEVERAL CANDIDATE NUTRIENTS AND THEIR FAMILY MEMBERS MAY HAVE ROLES IN THE PREVENTION OF DISEASES, INCLUDING HEPATIC STEATOSIS AND INFLAMMATION-RELATED DISEASES (I.E., NONALCOHOLIC STEATOHEPATITIS) VIA EPIGENETIC REGULATION. FURTHER STUDIES ARE WARRANTED TO DETERMINE WHICH SPECIFIC AMINO ACIDS, UNSATURATED FATTY ACIDS AND LIPID-SOLUBLE VITAMINS OR SPECIFIC MINERALS INFLUENCE THE DEVELOPMENT OF STEATOSIS AND INFLAMMATORY-RELATED DISEASES. 2023 9 3036 32 GENISTEIN AMELIORATES RENAL FIBROSIS THROUGH REGULATION SNAIL VIA M6A RNA DEMETHYLASE ALKBH5. RENAL TUBULE-INTERSTITIAL FIBROSIS IS RELATED TO CHRONIC KIDNEY DISEASE PROGRESSION AND A TYPICAL FEATURE OF THE AGING KIDNEY. EPIGENETIC MODIFICATIONS OF FIBROSIS-PRONE GENES REGULATE THE DEVELOPMENT OF RENAL FIBROSIS. AS A KIND OF "EPIGENETIC DIET", SOY ISOFLAVONE GENISTEIN WAS REPORTED TO HAVE RENAL PROTECTIVE ACTION AND EPIGENETIC-MODULATING EFFECTS. HOWEVER, ITS RENAL PROTECTION ROLE AND UNDERLYING MECHANISMS ARE YET TO BE FULLY CLARIFIED. HEREIN, WE SHOWED THAT GENISTEIN EXHIBITS A DEMONSTRABLE ANTI-FIBROTIC EFFECT ON KIDNEY IN VIVO UUO (UNILATERAL URETERAL OCCLUSION) MODEL AND RENAL EPITHELIAL CELLS IN VITRO MODEL. THE MECHANISM IS STRONGLY ASSOCIATED WITH EPITHELIAL-TO-MESENCHYMAL TRANSITION AND M6A RNA DEMETHYLASE ALKBH5. MOUSE FIBROTIC KIDNEYS INDUCED BY UUO EXHIBITED ADVERSE EXPRESSION OF RENAL FIBROSIS-RELATED PROTEINS AND SIGNIFICANT INCREASES IN THE TOTAL M6A LEVEL. AS AN ERASER, ALKBH5 SHOWED SEVERER SUPPRESSION IN THE RENAL FIBROSIS PROCESS. HOWEVER, GENISTEIN PRETREATMENT RESTORED ALKBH5 LOSS REMARKABLY AND REDUCED RENAL FIBROSIS, ABNORMAL PROTEIN, AND INFLAMMATORY MARKERS. THE EXAMINATION OF POSSIBLE MECHANISMS REVEALED THAT GENISTEIN PROMOTED ALKBH5 AND MAYBE INDUCED THE LEVEL OF MRNA M6A METHYLATION IN SOME EPITHELIAL-TO-MESENCHYMAL TRANSITION-RELATED TRANSCRIPTION FACTORS. WE FOUND SNAIL WAS THE CRITICAL REGULATOR AND CRITICAL FOR THE PROTECTIVE ROLE OF GENISTEIN. TO VERIFY THE RELATIONSHIP BETWEEN ALKBH5 AND SNAIL, WE GENERATED KNOCKDOWN AND OVEREXPRESSION OF ALKBH5 CELLS IN VITRO. ALKBH5 KNOCKDOWN ENHANCED THE MESENCHYMAL PHENOTYPE MARKER ALPHA-SMOOTH MUSCLE ACTIN AND SNAIL EXPRESSION. IN AGREEMENT, OVEREXPRESSION ALKBH5 INCREASED EPITHELIAL ADHESION MOLECULE E-CADHERIN AND REDUCED SNAIL EXPRESSION. IN CONCLUSION, GENISTEIN INCREASED RENAL ALKBH5 EXPRESSION IN UUO-INDUCED RENAL FIBROSIS AND REDUCED RNA M6A LEVELS AND AMELIORATES RENAL DAMAGES. 2020 10 4044 19 MACROPHAGES IN OXIDATIVE STRESS AND MODELS TO EVALUATE THE ANTIOXIDANT FUNCTION OF DIETARY NATURAL COMPOUNDS. ANTIOXIDANT TESTING OF NATURAL PRODUCTS HAS ATTRACTED INCREASING INTEREST IN RECENT YEARS, MAINLY DUE TO THE FACT THAT AN ANTIOXIDANT-RICH DIET MIGHT PROVIDE HEALTH BENEFITS. ACTIVATED MACROPHAGES ARE A MAJOR SOURCE OF REACTIVE OXYGEN SPECIES, REACTIVE NITROGEN SPECIES, AND PEROXYNITRITE GENERATED THROUGH THE SO-CALLED RESPIRATORY BURST. CONSTITUTIVELY RELEASED PROINFLAMMATORY CYTOKINE, ESPECIALLY TUMOR NECROSIS FACTOR-ALPHA, TRIGGERS NUCLEAR FACTOR-KAPPAB, AND ACTIVATOR PROTEIN-1 TRANSLOCATION LEADING TO THE OVER PRODUCTION OF REACTIVE OXYGEN SPECIES AND REACTIVE NITROGEN SPECIES IN MACROPHAGES. ACTIVATION OF TRANSCRIPTION FACTORS IN THE LONG-LIVED TISSUE-RESIDENT MACROPHAGES AND/OR MONOCYTE-DERIVED MACROPHAGES, TRIGGER EPIGENETIC MODIFICATIONS LEADING TO THE PATHOGENESIS OF CHRONIC DISEASES. NUTRACEUTICALS INCLUDING LIPID RAFT STRUCTURE DISRUPTION AGENT, CHOLESTEROL DEPLETION AGENT, FARNESYLTRANSFERASE INHIBITOR, NUCLEAR FACTOR-KAPPAB BLOCKER (ALPHA,BETA-UNSATURATED CARBONYL COMPOUNDS), GLUCOCORTICOID RECEPTOR AGONIST, AND PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR-GAMMA AGONIST HAVE LONG BEEN USED TO INACTIVE MACROPHAGE. THE INHIBITION EFFECTS ON THE FORMATION OF NITRIC OXIDE, SUPEROXIDE, AND NITRITE PEROXIDE MAY BE RESPONSIBLE FOR THE ANTI-INFLAMMATORY FUNCTIONALITIES. ACTIVATED MACROPHAGE MODELS COULD BE USED TO IDENTIFY THE ACTIVE COMPONENTS FOR FUNCTIONAL DIETS DEVELOPMENT THROUGH A MULTIPLE TARGETS STRATEGY. 2017 11 5915 30 TARGETING A PHOSPHO-STAT3-MIRNAS PATHWAY IMPROVES VESICULAR HEPATIC STEATOSIS IN AN IN VITRO AND IN VIVO MODEL. NON-ALCOHOLIC FATTY LIVER DISEASE (NAFLD) IS A LEADING CAUSE OF CHRONIC LIVER DISEASE. ALTHOUGH GENETIC PREDISPOSITION AND EPIGENETIC FACTORS CONTRIBUTE TO THE DEVELOPMENT OF NAFLD, OUR UNDERSTANDING OF THE MOLECULAR MECHANISM INVOLVED IN THE PATHOGENESIS OF THE DISEASE IS STILL EMERGING. HERE WE INVESTIGATED A POSSIBLE ROLE OF A MICRORNAS-STAT3 PATHWAY IN THE INDUCTION OF HEPATIC STEATOSIS. DIFFERENTIATED HEPARG CELLS TREATED WITH THE FATTY ACID SODIUM OLEATE (FATTY DHEPARG) RECAPITULATED FEATURES OF LIVER VESICULAR STEATOSIS AND ACTIVATED A CELL-AUTONOMOUS INFLAMMATORY RESPONSE, INDUCING STAT3-TYROSINE-PHOSPHORYLATION. WITH A GENOME-WIDE APPROACH (CHROMATIN IMMUNOPRECIPITATION SEQUENCING), MANY PHOSPHO-STAT3 BINDING SITES WERE IDENTIFIED IN FATTY DHEPARG CELLS AND SEVERAL STAT3 AND/OR NAFLD-REGULATED MICRORNAS SHOWED INCREASED EXPRESSION LEVELS, INCLUDING MIR-21. INNOVATIVE CARS (COHERENT ANTI-STOKES RAMAN SCATTERING) MICROSCOPY REVEALED THAT CHEMICAL INHIBITION OF STAT3 ACTIVITY DECREASED LIPID ACCUMULATION AND DEREGULATED STAT3-RESPONSIVE MICRORNAS, INCLUDING MIR-21, IN LIPID OVERLOADED DHEPARG CELLS. WE WERE ABLE TO SHOW IN VIVO THAT REDUCING PHOSPHO-STAT3-MIR-21 LEVELS IN C57/BL6 MICE LIVER, BY LONG-TERM TREATMENT WITH METFORMIN, PROTECTED MICE FROM AGING-DEPENDENT HEPATIC VESICULAR STEATOSIS. OUR RESULTS IDENTIFIED A MICRORNAS-PHOSPHOSTAT3 PATHWAY INVOLVED IN THE DEVELOPMENT OF HEPATIC STEATOSIS, WHICH MAY REPRESENT A MOLECULAR MARKER FOR BOTH DIAGNOSIS AND THERAPEUTIC TARGETING. 2018 12 312 33 ALCOHOL FEEDING IN MICE PROMOTES COLONIC HYPERPERMEABILITY AND CHANGES IN COLONIC ORGANOID STEM CELL FATE. BACKGROUND: ALCOHOL INCREASES INTESTINAL PERMEABILITY TO PROINFLAMMATORY MICROBIAL PRODUCTS THAT PROMOTE LIVER DISEASE, EVEN AFTER A PERIOD OF SOBRIETY. WE SOUGHT TO TEST THE HYPOTHESIS THAT ALCOHOL AFFECTS INTESTINAL STEM CELLS USING AN IN VIVO MODEL AND EX VIVO ORGANOIDS GENERATED FROM JEJUNUM AND COLON FROM MICE FED CHRONIC ALCOHOL. METHODS: MICE WERE FED A CONTROL OR AN ALCOHOL DIET. INTESTINAL PERMEABILITY, LIVER STEATOSIS-INFLAMMATION, AND STOOL SHORT-CHAIN FATTY ACIDS (SCFAS) WERE MEASURED. JEJUNUM AND COLONIC ORGANOIDS AND TISSUE WERE STAINED FOR STEM CELL, CELL LINEAGE, AND APICAL JUNCTION MARKERS WITH ASSESSMENT OF MRNA BY PCR AND RNA-SEQ. CHIP-PCR ANALYSIS WAS CARRIED OUT FOR NOTCH1 USING AN ANTIBODY SPECIFIC FOR ACETYLATED HISTONE 3. RESULTS: ALCOHOL-FED MICE EXHIBITED COLONIC (BUT NOT SMALL INTESTINAL) HYPERPERMEABILITY, STEATOHEPATITIS, AND DECREASED BUTYRATE/TOTAL SCFA RATIO IN STOOL. STEM CELL, CELL LINEAGE, AND APICAL JUNCTION MARKER STAINING IN TISSUE OR ORGANOIDS FROM JEJUNUM TISSUE WERE NOT IMPACTED BY ALCOHOL. ONLY CHROMOGRANIN A (CHGA) WAS INCREASED IN JEJUNUM ORGANOIDS BY QPCR. HOWEVER, COLONIC TISSUE AND ORGANOID STAINING EXHIBITED AN ALCOHOL-INDUCED SIGNIFICANT DECREASE IN CYTOKERATIN 20+ (KRT20+) ABSORPTIVE LINEAGE ENTEROCYTES, A DECREASE IN OCCLUDIN AND E-CADHERIN APICAL JUNCTION PROTEINS, AN INCREASE IN CHGA, AND AN INCREASE IN THE LGR5 STEM CELL MARKER. QPCR REVEALED AN ALCOHOL-INDUCED DECREASE IN COLONIC ORGANOID AND TISSUE NOTCH1, HES1, AND KRT20 AND INCREASED CHGA, SUPPORTING AN ALTERATION IN STEM CELL FATE DUE TO DECREASED NOTCH1 EXPRESSION. COLONIC TISSUE CHIP-PCR REVEALED ALCOHOL FEEDING SUPPRESSED NOTCH1 MRNA EXPRESSION (VIA DEACETYLATION OF HISTONE H3) AND DECREASED NOTCH1 TISSUE STAINING. CONCLUSIONS: DATA SUPPORT A MODEL FOR ALCOHOL-INDUCED COLONIC HYPERPERMEABILITY VIA EPIGENETIC EFFECTS ON NOTCH1, AND THUS HES1, SUPPRESSION THROUGH A MECHANISM INVOLVING HISTONE H3 DEACETYLATION AT THE NOTCH1 LOCUS. THIS DECREASED ENTEROCYTE AND INCREASED ENTEROENDOCRINE CELL COLONIC STEM CELL FATE AND DECREASED APICAL JUNCTIONAL PROTEINS LEADING TO HYPERPERMEABILITY. 2017 13 661 30 BLOOD MIR-144-3P: A NOVEL DIAGNOSTIC AND THERAPEUTIC TOOL FOR DEPRESSION. MAJOR DEPRESSIVE DISORDER (MDD) IS THE LEADING CAUSE OF DISABILITY WORLDWIDE. THERE IS AN URGENT NEED FOR OBJECTIVE BIOMARKERS TO DIAGNOSE THIS HIGHLY HETEROGENEOUS SYNDROME, ASSIGN TREATMENT, AND EVALUATE TREATMENT RESPONSE AND PROGNOSIS. MICRORNAS (MIRNAS) ARE SHORT NON-CODING RNAS, WHICH ARE DETECTED IN BODY FLUIDS THAT HAVE EMERGED AS POTENTIAL BIOMARKERS OF MANY DISEASE CONDITIONS. THE PRESENT STUDY EXPLORED THE POTENTIAL USE OF MIRNAS AS BIOMARKERS FOR MDD AND ITS TREATMENT. WE PROFILED THE EXPRESSION LEVELS OF CIRCULATING BLOOD MIRNAS FROM MICE THAT WERE COLLECTED BEFORE AND AFTER EXPOSURE TO CHRONIC SOCIAL DEFEAT STRESS (CSDS), AN EXTENSIVELY VALIDATED MOUSE MODEL USED TO STUDY DEPRESSION, AS WELL AS AFTER EITHER REPEATED IMIPRAMINE OR SINGLE-DOSE KETAMINE TREATMENT. WE OBSERVED ROBUST DIFFERENCES IN BLOOD MIRNA SIGNATURES BETWEEN STRESS-RESILIENT AND STRESS-SUSCEPTIBLE MICE AFTER AN INCUBATION PERIOD, BUT NOT IMMEDIATELY AFTER EXPOSURE TO THE STRESS. FURTHERMORE, KETAMINE TREATMENT WAS MORE EFFECTIVE THAN IMIPRAMINE AT RE-ESTABLISHING BASELINE MIRNA EXPRESSION LEVELS, BUT ONLY IN MICE THAT RESPONDED BEHAVIORALLY TO THE DRUG. WE IDENTIFIED THE RED BLOOD CELL-SPECIFIC MIR-144-3P AS A CANDIDATE BIOMARKER TO AID DEPRESSION DIAGNOSIS AND PREDICT KETAMINE TREATMENT RESPONSE IN STRESS-SUSCEPTIBLE MICE AND MDD PATIENTS. LASTLY, WE DEMONSTRATE THAT SYSTEMIC KNOCKDOWN OF MIR-144-3P, VIA SUBCUTANEOUS ADMINISTRATION OF A SPECIFIC ANTAGOMIR, IS SUFFICIENT TO REDUCE THE DEPRESSION-RELATED PHENOTYPE IN STRESS-SUSCEPTIBLE MICE. RNA-SEQUENCING ANALYSIS OF BLOOD AFTER SUCH MIR-144-3P KNOCKDOWN REVEALED A BLUNTED TRANSCRIPTIONAL STRESS SIGNATURE AS WELL. THESE FINDINGS IDENTIFY MIR-144-3P AS A NOVEL TARGET FOR DIAGNOSIS OF MDD AS WELL AS FOR ANTIDEPRESSANT TREATMENT, AND ENHANCE OUR UNDERSTANDING OF EPIGENETIC PROCESSES ASSOCIATED WITH DEPRESSION. 2022 14 4580 28 N(6)-METHYLADENOSINE MODIFICATION OF FATTY ACID AMIDE HYDROLASE MESSENGER RNA IN CIRCULAR RNA STAG1-REGULATED ASTROCYTE DYSFUNCTION AND DEPRESSIVE-LIKE BEHAVIORS. BACKGROUND: N(6)-METHYLADENOSINE (M(6)A) IS THE MOST ABUNDANT EPIGENETIC MODIFICATION IN EUKARYOTIC MESSENGER RNAS AND IS ESSENTIAL FOR MULTIPLE RNA PROCESSING EVENTS IN PHYSIOLOGICAL AND PATHOLOGICAL PROCESSES. HOWEVER, PRECISELY HOW M(6)A METHYLATION IS INVOLVED IN MAJOR DEPRESSIVE DISORDER (MDD) IS NOT FULLY UNDERSTOOD. METHODS: CIRCULAR RNA STAG1 (CIRCSTAG1) WAS SCREENED FROM THE HIPPOCAMPUS OF CHRONIC UNPREDICTABLE STRESS-TREATED MICE USING HIGH-THROUGHPUT RNA SEQUENCING. MICROINJECTION OF CIRCSTAG1 LENTIVIRUS INTO THE MOUSE HIPPOCAMPUS WAS USED TO OBSERVE THE ROLE OF CIRCSTAG1 IN DEPRESSION. SUCROSE PREFERENCE, FORCED SWIM, AND TAIL SUSPENSION TESTS WERE PERFORMED TO EVALUATE THE DEPRESSIVE-LIKE BEHAVIORS OF MICE. ASTROCYTE DYSFUNCTION WAS EXAMINED BY GFAP IMMUNOSTAINING AND 3D RECONSTRUCTION. METHYLATED RNA IMMUNOPRECIPITATION SEQUENCE ANALYSIS WAS USED TO IDENTIFY DOWNSTREAM TARGETS OF CIRCSTAG1/ALKBH5 (ALKB HOMOLOG 5) AXIS. CELL COUNTING KIT-8 ASSAY WAS PERFORMED TO EVALUATE ASTROCYTE VIABILITY IN VITRO. RESULTS: CIRCSTAG1 WAS SIGNIFICANTLY DECREASED IN THE CHRONIC UNPREDICTABLE STRESS-TREATED MOUSE HIPPOCAMPUS AND IN PERIPHERAL BLOOD OF PATIENTS WITH MDD. OVEREXPRESSION OF CIRCSTAG1 NOTABLY ATTENUATED ASTROCYTE DYSFUNCTION AND DEPRESSIVE-LIKE BEHAVIORS INDUCED BY CHRONIC UNPREDICTABLE STRESS. FURTHER EXAMINATION INDICATED THAT OVEREXPRESSED CIRCSTAG1 CAPTURED ALKBH5 AND DECREASED THE TRANSLOCATION OF ALKBH5 INTO THE NUCLEUS, LEADING TO INCREASED M(6)A METHYLATION OF FATTY ACID AMIDE HYDROLASE (FAAH) MESSENGER RNA AND DEGRADATION OF FAAH IN ASTROCYTES WITH SUBSEQUENT ATTENUATION OF DEPRESSIVE-LIKE BEHAVIORS AND ASTROCYTE LOSS INDUCED BY CORTICOSTERONE IN VITRO. CONCLUSIONS: OUR FINDINGS DISSECT THE FUNCTIONAL LINK BETWEEN CIRCSTAG1 AND M(6)A METHYLATION IN THE CONTEXT OF MDD, PROVIDING EVIDENCE THAT CIRCSTAG1 MAY BE A NOVEL THERAPEUTIC TARGET FOR MDD. 2020 15 788 24 CELLULAR ALLOSTATIC LOAD IS LINKED TO INCREASED ENERGY EXPENDITURE AND ACCELERATED BIOLOGICAL AGING. STRESS TRIGGERS ANTICIPATORY PHYSIOLOGICAL RESPONSES THAT PROMOTE SURVIVAL, A PHENOMENON TERMED ALLOSTASIS. HOWEVER, THE CHRONIC ACTIVATION OF ENERGY-DEPENDENT ALLOSTATIC RESPONSES RESULTS IN ALLOSTATIC LOAD, A DYSREGULATED STATE THAT PREDICTS FUNCTIONAL DECLINE, ACCELERATES AGING, AND INCREASES MORTALITY IN HUMANS. THE ENERGETIC COST AND CELLULAR BASIS FOR THE DAMAGING EFFECTS OF ALLOSTATIC LOAD HAVE NOT BEEN DEFINED. HERE, BY LONGITUDINALLY PROFILING THREE UNRELATED PRIMARY HUMAN FIBROBLAST LINES ACROSS THEIR LIFESPAN, WE FIND THAT CHRONIC GLUCOCORTICOID EXPOSURE INCREASES CELLULAR ENERGY EXPENDITURE BY APPROXIMATELY 60%, ALONG WITH A METABOLIC SHIFT FROM GLYCOLYSIS TO MITOCHONDRIAL OXIDATIVE PHOSPHORYLATION (OXPHOS). THIS STATE OF STRESS-INDUCED HYPERMETABOLISM IS LINKED TO MTDNA INSTABILITY, NON-LINEARLY AFFECTS AGE-RELATED CYTOKINES SECRETION, AND ACCELERATES CELLULAR AGING BASED ON DNA METHYLATION CLOCKS, TELOMERE SHORTENING RATE, AND REDUCED LIFESPAN. PHARMACOLOGICALLY NORMALIZING OXPHOS ACTIVITY WHILE FURTHER INCREASING ENERGY EXPENDITURE EXACERBATES THE ACCELERATED AGING PHENOTYPE, POINTING TO TOTAL ENERGY EXPENDITURE AS A POTENTIAL DRIVER OF AGING DYNAMICS. TOGETHER, OUR FINDINGS DEFINE BIOENERGETIC AND MULTI-OMIC RECALIBRATIONS OF STRESS ADAPTATION, UNDERSCORING INCREASED ENERGY EXPENDITURE AND ACCELERATED CELLULAR AGING AS INTERRELATED FEATURES OF CELLULAR ALLOSTATIC LOAD. 2023 16 5960 26 TELOMERE LENGTH IN HEPATOCELLULAR CARCINOMA AND PAIRED ADJACENT NON-TUMOR TISSUES BY QUANTITATIVE PCR. TELOMERE SHORTENING LIMITS THE PROLIFERATIVE CAPACITY OF HUMAN CELLS, RESTRAINS THE REGENERATIVE CAPACITY OF ORGAN SYSTEMS DURING CHRONIC DISEASES AND AGING AND ALSO INDUCES CHROMOSOMAL INSTABILITY AS WELL AS INITIATION OF CANCER. PREVIOUS STUDIES DEMONSTRATED THAT TELOMERES ARE OFTEN SIGNIFICANTLY SHORTER IN TUMOR TISSUE, INCLUDING HEPATOCELLULAR CARCINOMA (HCC), COMPARED TO THE SURROUNDING TISSUE, BUT TELOMERE LENGTH IN HCC TISSUES WAS NOT CORRELATED WITH SEVERAL CLINICAL PARAMETERS, SUCH AS AGE, SEX, HBV OR HCV INFECTIONS AND TUMOR SIZE. IN THE PRESENT STUDY, THE TELOMERE LENGTH RATIO OF 36 PAIRED HCC, AND THEIR ADJACENT NON-TUMOR TISSUES WAS MEASURED BY QUANTITATIVE PCR (Q-PCR). THE MEAN TELOMERE LENGTHS (SD) FOR HCC AND ADJACENT NON-TUMOR TISSUES WERE 0.26 (0.10) AND 0.47 (0.20) RESPECTIVELY (T = 6.22, P < 0.0001). THERE WAS A LARGE DIFFERENCE IN THE DISTRIBUTION OF SUBJECTS BASED ON TELOMERE LENGTH IN TUMOR AND ADJACENT NON-TUMOR TISSUES. THE NUMBER OF TUMORS WITH TELOMERE LENGTH SHORTER THAN 0.50 WAS MUCH HIGHER THAN THAT OF ADJACENT NON-TUMOR TISSUES; MORE THAN 90% OF THE TISSUES WITH TELOMERE LENGTH > OR = 0.50 WERE ADJACENT NON-TUMOR TISSUES. THE CORRELATIONS BETWEEN TELOMERE LENGTH AND AFLATOXIN B1- AND POLYCYCLIC AROMATIC HYDROCARBON-DNA ADDUCTS LEVEL, P53 MUTATIONS AND P16 HYPERMETHYLATION STATUS WERE ALSO TESTED, BUT NO SIGNIFICANT ASSOCIATIONS WERE FOUND. THE RELATIONSHIP BETWEEN TELOMERE LENGTH SHORTENING, CHEMICAL CARCINOGEN EXPOSURE, AND GENETIC AND EPIGENETIC CHANGES IN HEPATOCARCINOGENESIS NEEDS FURTHER INVESTIGATION. 2007 17 4303 26 MICRORNA-223 INHIBITS TISSUE FACTOR EXPRESSION IN VASCULAR ENDOTHELIAL CELLS. OBJECTIVE: ATHEROSCLEROSIS IS A CHRONIC INFLAMMATORY PROCESS, IN WHICH VASCULAR ENDOTHELIAL CELLS (ECS) BECOME DYSFUNCTIONAL OWING TO THE EFFECTS OF CHEMICAL SUBSTANCES, SUCH AS INFLAMMATORY FACTOR AND GROWTH FACTORS. TISSUE FACTOR (TF) EXPRESSION IS INDUCED BY THE ABOVE CHEMICAL SUBSTANCES IN ACTIVATED ECS. TF INITIATES THROMBOSIS ON DISRUPTED ATHEROSCLEROTIC PLAQUES WHICH PLAYS AN ESSENTIAL ROLE DURING THE ONSET OF ACUTE CORONARY SYNDROMES (ACS). INCREASING EVIDENCES SUGGEST THE IMPORTANT ROLE OF MICRORNAS AS EPIGENETIC REGULATORS OF ATHEROSCLEROTIC DISEASE. THE AIM OF OUR STUDY IS TO IDENTIFY IF MICRORNA-223 (MIR-223) TARGETS TF IN ECS. METHODS AND RESULTS: BIOINFORMATIC ANALYSIS SHOWED THAT TF IS A TARGET CANDIDATE OF MIR-223. WESTERN BLOTTING ANALYSIS REVEALED THAT TUMOR NECROSIS FACTOR ALPHA (TNF-ALPHA) INCREASED TF EXPRESSION IN AORTA OF C57BL/6J MICE AND CULTURED ECS (EA.HY926 CELLS AND HUVEC) AFTER 4 H TREATMENT. IN TNF-ALPHA TREATED ECS, TF MRNA WAS ALSO INCREASED MEASURED BY REAL-TIME PCR. REAL-TIME PCR RESULTS SHOWED THAT MIR-223 LEVELS WERE DOWNREGULATED IN TNF-ALPHA-TREATED AORTA OF C57BL/6J MICE AND CULTURED ECS. TRANSFECTION OF ECS WITH MIR-223 MIMIC OR MIR-223 INHIBITOR MODIFIED TF EXPRESSION BOTH IN MRNA AND PROTEIN LEVELS. LUCIFERASE ASSAYS CONFIRMED THAT MIR-223 SUPPRESSED TF EXPRESSION BY BINDING TO THE SEQUENCE OF TF 3'-UNTRANSLATED REGIONS (3'UTR). TF PROCOAGULANT ACTIVITY WAS INHIBITED BY OVEREXPRESSING MIR-223 WITH OR WITHOUT TNF-ALPHA STIMULATION. CONCLUSIONS: MIR-223-MEDIATED SUPPRESSION OF TF EXPRESSION PROVIDES A NOVEL MOLECULAR MECHANISM FOR THE REGULATION OF COAGULATION CASCADE, AND SUGGESTS A CLUE AGAINST THROMBOGENESIS DURING THE PROCESS OF ATHEROSCLEROTIC PLAQUE RUPTURE. 2014 18 4347 24 MIR-140 ATTENUATES THE PROGRESSION OF EARLY-STAGE OSTEOARTHRITIS BY RETARDING CHONDROCYTE SENESCENCE. OSTEOARTHRITIS (OA) IS A MAJOR CAUSE OF JOINT PAIN AND DISABILITY, AND CHONDROCYTE SENESCENCE IS A KEY PATHOLOGICAL PROCESS IN OA AND MAY BE A TARGET OF NEW THERAPEUTICS. MICRORNA-140 (MIR-140) PLAYS A PROTECTIVE ROLE IN OA, BUT LITTLE IS KNOWN ABOUT ITS EPIGENETIC EFFECT ON CHONDROCYTE SENESCENCE. IN THIS STUDY, WE FIRST VALIDATED THE FEATURES OF CHONDROCYTE SENESCENCE CHARACTERIZED BY INCREASED CELL CYCLE ARREST IN THE G0/G1 PHASE AND THE EXPRESSION OF SENESCENCE-ASSOCIATED BETA-GALACTOSIDASE (SA-BETAGAL), P16(INK4A), P21, P53, AND GAMMAH2AX IN HUMAN KNEE OA. THEN, WE REVEALED IN INTERLEUKIN 1BETA (IL-1BETA)-INDUCED OA CHONDROCYTES IN VITRO THAT PRETRANSFECTION WITH MIR-140 EFFECTIVELY INHIBITED THE EXPRESSION OF SA-BETAGAL, P16(INK4A), P21, P53, AND GAMMAH2AX. FURTHERMORE, IN VIVO RESULTS FROM TRAUMA-INDUCED EARLY-STAGE OA RATS SHOWED THAT INTRA-ARTICULARLY INJECTED MIR-140 COULD RAPIDLY REACH THE CHONDROCYTE CYTOPLASM AND INDUCE MOLECULAR CHANGES SIMILAR TO THE IN VITRO RESULTS, RESULTING IN A NOTICEABLE ALLEVIATION OF OA PROGRESSION. FINALLY, BIOINFORMATICS ANALYSIS PREDICTED THE POTENTIAL TARGETS OF MIR-140 AND A MECHANISTIC NETWORK BY WHICH MIR-140 REGULATES CHONDROCYTE SENESCENCE. COLLECTIVELY, MIR-140 CAN EFFECTIVELY ATTENUATE THE PROGRESSION OF EARLY-STAGE OA BY RETARDING CHONDROCYTE SENESCENCE, CONTRIBUTING NEW EVIDENCE OF THE INVOLVEMENT OF MIR-MEDIATED EPIGENETIC REGULATION OF CHONDROCYTE SENESCENCE IN OA PATHOGENESIS. 2020 19 951 39 CHRONIC MILD STRESS MODIFIED EPIGENETIC MECHANISMS LEADING TO ACCELERATED SENESCENCE AND IMPAIRED COGNITIVE PERFORMANCE IN MICE. COGNITIVE AND BEHAVIOURAL DISTURBANCES ARE A GROWING PUBLIC HEALTHCARE ISSUE FOR THE MODERN SOCIETY, AS STRESSFUL LIFESTYLE IS BECOMING MORE AND MORE COMMON. BESIDES, SEVERAL PIECES OF EVIDENCE STATE THAT ENVIRONMENT IS CRUCIAL IN THE DEVELOPMENT OF SEVERAL DISEASES AS WELL AS COMPROMISING HEALTHY AGING. THEREFORE, IT IS IMPORTANT TO STUDY THE EFFECTS OF STRESS ON COGNITION AND ITS RELATIONSHIP WITH AGING. TO ADDRESS THESE QUERIES, CHRONIC MILD STRESS (CMS) PARADIGM WAS USED IN THE SENESCENCE-ACCELERATED MOUSE PRONE 8 (SAMP8) AND RESISTANT 1 (SAMR1). ON ONE HAND, WE DETERMINED THE CHANGES PRODUCED IN THE THREE MAIN EPIGENETIC MARKS AFTER 4 WEEKS OF CMS TREATMENT, SUCH AS A REDUCTION IN HISTONE POSTTRANSLATIONAL MODIFICATIONS AND DNA METHYLATION, AND UP-REGULATION OR DOWN-REGULATION OF SEVERAL MIRNA INVOLVED IN DIFFERENT CELLULAR PROCESSES IN MICE. IN ADDITION, CMS TREATMENT INDUCED REACTIVE OXYGEN SPECIES (ROS) DAMAGE ACCUMULATION AND LOSS OF ANTIOXIDANT DEFENCE MECHANISMS, AS WELL AS INFLAMMATORY SIGNALLING ACTIVATION THROUGH NF-KAPPAB PATHWAY AND ASTROGLIOSIS MARKERS, LIKE GFAP. REMARKABLY, CMS ALTERED MTORC1 SIGNALLING IN BOTH STRAINS, DECREASING AUTOPHAGY ONLY IN SAMR1 MICE. WE FOUND A DECREASE IN GLYCOGEN SYNTHASE KINASE 3 BETA (GSK-3BETA) INACTIVATION, HYPERPHOSPHORYLATION OF TAU AND AN INCREASE IN SAPPBETA PROTEIN LEVELS IN MICE UNDER CMS. MOREOVER, REDUCTION IN THE NON-AMYLOIDOGENIC SECRETASE ADAM10 PROTEIN LEVELS WAS FOUND IN SAMR1 CMS GROUP. CONSEQUENTLY, DETRIMENTAL EFFECTS ON BEHAVIOUR AND COGNITIVE PERFORMANCE WERE DETECTED IN CMS TREATED MICE, AFFECTING MAINLY SAMR1 MICE, PROMOTING A TURNING TO SAMP8 PHENOTYPE. IN CONCLUSION, CMS IS A FEASIBLE INTERVENTION TO UNDERSTAND THE INFLUENCE OF STRESS ON EPIGENETIC MECHANISMS UNDERLYING COGNITION AND ACCELERATING SENESCENCE. 2020 20 1125 33 COMPLEX INHIBITION OF AUTOPHAGY BY MITOCHONDRIAL ALDEHYDE DEHYDROGENASE SHORTENS LIFESPAN AND EXACERBATES CARDIAC AGING. AUTOPHAGY, A CONSERVATIVE DEGRADATION PROCESS FOR LONG-LIVED AND DAMAGED PROTEINS, PARTICIPATES IN A CASCADE OF BIOLOGICAL PROCESSES INCLUDING AGING. A NUMBER OF AUTOPHAGY REGULATORS HAVE BEEN IDENTIFIED. HERE WE DEMONSTRATED THAT MITOCHONDRIAL ALDEHYDE DEHYDROGENASE (ALDH2), AN ENZYME WITH THE MOST COMMON SINGLE POINT MUTATION IN HUMANS, GOVERNS CARDIAC AGING THROUGH REGULATION OF AUTOPHAGY. MYOCARDIAL MECHANICAL AND AUTOPHAGY PROPERTIES WERE EXAMINED IN YOUNG (4MONTHS) AND OLD (26-28MONTHS) WILD-TYPE (WT) AND GLOBAL ALDH2 TRANSGENIC MICE. ALDH2 OVEREXPRESSION SHORTENED LIFESPAN BY 7.7% WITHOUT AFFECTING AGING-ASSOCIATED CHANGES IN PLASMA METABOLIC PROFILES. MYOCARDIAL FUNCTION WAS COMPROMISED WITH AGING ASSOCIATED WITH CARDIAC HYPERTROPHY, THE EFFECTS WERE ACCENTUATED BY ALDH2. AGING OVERTLY SUPPRESSED AUTOPHAGY AND COMPROMISED AUTOPHAGY FLUX, THE EFFECTS WERE EXACERBATED BY ALDH2. AGING DAMPENED PHOSPHORYLATION OF JNK, BCL-2, IKKBETA, AMPK AND TSC2 WHILE PROMOTING PHOSPHORYLATION OF MTOR, THE EFFECTS OF WHICH WERE EXAGGERATED BY ALDH2. CO-IMMUNOPRECIPITATION REVEALED INCREASED DISSOCIATION BETWEEN BCL-2 AND BECLIN-1 (RESULT OF DECREASED BCL-2 PHOSPHORYLATION) IN AGING, THE EFFECT OF WHICH WAS EXACERBATED WITH ALDH2. CHRONIC TREATMENT OF THE AUTOPHAGY INDUCER RAPAMYCIN ALLEVIATED AGING-INDUCED CARDIAC DYSFUNCTION IN BOTH WT AND ALDH2 MICE. MOREOVER, ACTIVATION OF JNK AND INHIBITION OF EITHER BCL-2 OR IKKBETA OVERTLY ATTENUATED ALDH2 ACTIVATION-INDUCED ACCENTUATION OF CARDIOMYOCYTE AGING. EXAMINATION OF THE OTHERWISE ELDERLY INDIVIDUALS REVEALED A POSITIVE CORRELATION BETWEEN CARDIAC FUNCTION/GEOMETRY AND ALDH2 GENE MUTATION. TAKEN TOGETHER, OUR DATA REVEALED THAT ALDH2 ENZYME MAY SUPPRESS MYOCARDIAL AUTOPHAGY POSSIBLY THROUGH A COMPLEX JNK-BCL-2 AND IKKBETA-AMPK-DEPENDENT MECHANISM EN ROUTE TO ACCENTUATION OF MYOCARDIAL REMODELING AND CONTRACTILE DYSFUNCTION IN AGING. THIS ARTICLE IS PART OF A SPECIAL ISSUE ENTITLED: GENETIC AND EPIGENETIC CONTROL OF HEART FAILURE - EDITED BY JUN REN & MEGAN YINGMEI ZHANG. 2017